CX289888

Overview
NameCX289888
Unique NameCX289888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH602_PROM9 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=groL2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+EEGIVPGGG  L HLS  +    DK  + +E +GA+IV+ +L AP   IA NA            +  +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  396 DAINATKAAVEEGIVPGGGTTLAHLSPILKEWADKNLEGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKSKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+EEGIVPGGG  L+HL+  + AIK  L D DE+ GAD++ +AL AP   IA NA              ++  GY+AM  ++ +ML AGV DPAKV R ALQNAAS+A MVLTT+ +
Sbjct:  397 DALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGLAD-DEKTGADLIARALEAPLRQIADNAGVEGSVIAQKVRELDFNIGYDAMKGEFVDMLAAGVADPAKVVRSALQNAASIAAMVLTTEVL 520          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH60_CHLFF (60 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 59/125 (47.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+EEGI+PGGG ALV     + A    L + DE++GA IV KAL AP   IA NA            A     GY+A+ D Y +M++AG++DP KVTRCAL++AASVAG++LTT+A+
Sbjct:  398 DAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLARSSNEGYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEAL 522          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH602_PROMS (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain AS9601) GN=groL2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+EEGIVPGGG  L HLS  +    DK  + +E +GA+IV+ +L AP   IA NA               +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  396 DAINATKAAVEEGIVPGGGTTLAHLSPILKEWADKNLEGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKTKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH602_PROM0 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+EEGIVPGGG  L HLS  +    DK  + +E +GA+IV+ +L AP   IA NA               +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  396 DAINATKAAVEEGIVPGGGTTLAHLSPILKEWADKNLEGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKTKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 59/125 (47.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+ EGIVPGGG  L+HL+  + A+   L   +E+ GA IV  AL AP + IA NA            A ++  G+NA T  YE+++ AG+IDPAKV R ALQNA S+AGMVLTT+A+
Sbjct:  396 DALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSLSP-EEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEAL 519          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 59/125 (47.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+ EGIVPGGG  L+HL+  + A+   L   +E+ GA IV  AL AP + IA NA            A ++  G+NA T  YE+++ AG+IDPAKV R ALQNA S+AGMVLTT+A+
Sbjct:  396 DALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSLSP-EEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEAL 519          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH601_CHLCV (60 kDa chaperonin 1 OS=Chlamydophila caviae GN=groL1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+EEGI+PGGG ALV     + A    L + DE++GA IV KAL AP   IA NA            +   + GY+A+ D Y +M++AG++DP KVTRCAL++AASVAG++LTT+A+
Sbjct:  398 DAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLSRSSSEGYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEAL 522          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 64/126 (50.79%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA++EG V GGG ALV   D   AIKD K E +DE+ G +IV +AL AP   IA NA            + E   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  396 DALNSTRAAVDEGYVAGGGTALV---DVEKAIKDLKGETSDEQTGINIVLRALSAPVRQIAENAGKDGAVVLNKLESQENEIGYNAATDKWENMVEAGIIDPTKVTRTALQNAASIAALLLTTEAV 518          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH60_CHLMU (60 kDa chaperonin OS=Chlamydia muridarum GN=groL PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 58/125 (46.40%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+EEGI+PGGG AL+     + A    L + DER+GA IV KAL AP   IA NA            +     GY+A+ D Y +M++AG++DPAKVTR AL++AASVAG++LTT+A+
Sbjct:  398 DAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDERIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMIEAGILDPAKVTRSALESAASVAGLLLTTEAL 522          
The following BLAST results are available for this feature:
BLAST of CX289888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_PROM94.148e-2447.2060 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_GLOVI4.148e-2448.8060 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH60_CHLFF5.418e-2447.2060 kDa chaperonin OS=Chlamydophila felis (strain F... [more]
CH602_PROMS5.418e-2447.2060 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROM05.418e-2447.2060 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_THEVL7.076e-2447.2060 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB7.076e-2447.2060 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH601_CHLCV9.241e-2446.4060 kDa chaperonin 1 OS=Chlamydophila caviae GN=gro... [more]
CH60_LACAC1.207e-2350.7960 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH60_CHLMU1.207e-2346.4060 kDa chaperonin OS=Chlamydia muridarum GN=groL P... [more]

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Properties
Property NameValue
Genbank descriptionC02018B11SK IF1 Citrus clementina cDNA clone C02018B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289888 ID=CX289888; Name=CX289888; organism=Citrus clementina; type=EST; length=726bp
AATTCGGCACGAGGAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGG
TGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGG
ACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAG
GCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGG
TGAGGTTGTTGTGGAGAAGGTGAAAGCTAGTGAATGGACGACTGGTTACA
ATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGAGTTATTGAT
CCTGCAAAGGTGACAAGATGTGCATTGCAGAATGCGGCTTCAGTTGCAGG
AATGGTCCTGACCACTCAGGCTATTGTCGTGGAGAAGCCAAAGCCCAAAA
CTCCGGTAGCCGCTCCGCCACAAGGTCTTATGGTGTAATCTCTAGGACTC
TCCAGATTTAGTTAGGAGGTTTATAGATGAAAGAGTGGTTTTATTGCGGT
GAACTGAAAAGACAAGTTTTACTTAATTGATATAAAATCGTGTCTTTTTT
GTAAAAAAAAAAAAAAAAAACTCGAGTTTTTTTTTTTTTTTTTTACTAGG
AAGAGCTTCACAGCATCATTTTTATTCCAGAAAACATTATCTCTGTGGAT
CTCAAGAAGATAATCATATACATTACACATCGATAGGAGAGCCAAGAGTA
TATCTTATGAAATATCAAGAAACTCC
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