CX289900

Overview
NameCX289900
Unique NameCX289900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.453e-57
Identity = 108/134 (80.60%), Postives = 114/134 (85.07%), Query Frame = 1
Query:  115 GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 516
            GRIGRLVARV LQRDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWKHHELKVKD+KTLLFGEK V VFG+RNPEEIPWAE GA++VVESTGVFT               V+ISAPSKDAPMFVVGVNE EYKPE
Sbjct:    1 GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPE 134          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 5.522e-57
Identity = 108/144 (75.00%), Postives = 117/144 (81.25%), Query Frame = 1
Query:   88 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 519
            K+KIGINGFGRIGRLVARV L  DD+ELVAVNDPFITT+YMTYMFKYDSVHGQWK  ELKVKD KTLLFG+KP+TVFGVRNPEE PW E GAEYVVESTGVFT               V+ISAPS +APMFVVGVNE EYK ++
Sbjct:    2 KMKIGINGFGRIGRLVARVALMSDDIELVAVNDPFITTEYMTYMFKYDSVHGQWKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSGNAPMFVVGVNEKEYKKDI 145          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.780e-47
Identity = 89/143 (62.24%), Postives = 107/143 (74.83%), Query Frame = 1
Query:   88 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 516
            K+K+GINGFGRIGRLVARV L+RDD+ELVA+NDPFIT +YMTYMFKYDS HGQWK  E+ +  +  L FG  PV V+  R+P EIPW + GA++VVESTGVFT               V+ISAPSKDAPMFV+GVNE++Y  E
Sbjct:    6 KIKVGINGFGRIGRLVARVALERDDIELVAINDPFITPEYMTYMFKYDSTHGQWKKTEVTLHSEGHLTFGGNPVAVYACRDPSEIPWGKHGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVMGVNENKYSDE 148          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.411e-44
Identity = 86/114 (75.44%), Postives = 90/114 (78.95%), Query Frame = 1
Query:  178 VNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 519
            VNDPFITTDYMTYMFKYD+VHGQWKHHE+KVKD KTLLFGEK V VFG RNPEEIPWA  GAEYVVESTGVFT               VIISAPSKDAPMFV GVNE EYK ++
Sbjct:    1 VNDPFITTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSKDAPMFVCGVNEKEYKSDI 114          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.331e-39
Identity = 81/141 (57.45%), Postives = 100/141 (70.92%), Query Frame = 1
Query:   94 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 516
            K+GINGFGRIGR+V R  L+  D+++VA+NDPFI  DYM YMFKYDS HG++K  +++ KD K ++ G KP++VFG R+P  IPW + GA+YVVESTGVFT               VIISAPS DAPMFV GVN   YKPE
Sbjct:    4 KVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFKG-KVETKDGKLVIEG-KPISVFGERDPAAIPWGKAGADYVVESTGVFTTIEKASLHLKGGAKKVIISAPSADAPMFVCGVNLEAYKPE 142          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.975e-39
Identity = 79/143 (55.24%), Postives = 100/143 (69.93%), Query Frame = 1
Query:   91 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 519
            + IGINGFGRIGRLV R+ LQR D+++VAVNDPFI  +Y  YMFKYDS HG++K  E+  KDD  ++ G+  + VFG ++P  IPW + G +YV+ESTGVFT               VII+APS DAPMFVVGVNE +Y P+L
Sbjct:    3 ITIGINGFGRIGRLVLRIALQRSDIKVVAVNDPFIAPEYAAYMFKYDSTHGRYK-GEVTSKDDSLVIDGQS-IKVFGEKDPASIPWGKAGVDYVIESTGVFTTTEGAQKHIDGGAKKVIITAPSSDAPMFVVGVNEQKYTPDL 143          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.975e-39
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 1
Query:   94 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 519
            ++GINGFGRIGRLV R  +++D + +VA+NDPFI  +YM YMFK+DS HG++    ++ KD K ++ G K +T++G R+P EIPWAE GA+YVVESTGVFT               VIISAPSKDAPMFV GVNE +Y P+L
Sbjct:    5 QVGINGFGRIGRLVLRAAIEKDTMSVVAINDPFIDLEYMAYMFKFDSTHGRYAG-SVETKDGKLIVNG-KSITIYGHRDPAEIPWAEAGADYVVESTGVFTLKEKAEKHFTGGAKKVIISAPSKDAPMFVCGVNEDKYTPDL 144          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.577e-38
Identity = 82/142 (57.75%), Postives = 96/142 (67.61%), Query Frame = 1
Query:   91 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 516
            VK+GINGFGRIGR+V R  ++  D+E+VAVNDPFI  DYM YMFKYDS HG++K   ++VKD K L    K + VFG ++P  I W E GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   YKPE
Sbjct:    3 VKVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFIDLDYMVYMFKYDSTHGRFK-GSVEVKDGK-LYINNKAIAVFGEKDPANIKWGEAGAEYVVESTGVFTTTEKAGVHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPE 142          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.577e-38
Identity = 81/143 (56.64%), Postives = 98/143 (68.53%), Query Frame = 1
Query:   91 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 519
            +KIGINGFGRIGRLV RV L R D+E+VAVNDPFI  DY  YMFKYDS HG++K  E+    D  ++ G K + VF  R+P  IPW ++G +YV+ESTGVFT               VII+APS DAPMFVVGVNE +Y P+L
Sbjct:    3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYK-GEVTASGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKVEGAQKHIDAGAKKVIITAPSADAPMFVVGVNEDKYTPDL 143          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.395e-38
Identity = 82/141 (58.16%), Postives = 97/141 (68.79%), Query Frame = 1
Query:   91 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 513
            VK+GINGFGRIGRLV R  L+   VE+VAVNDPFI  DYM YMFK+DSVHG++K   ++ KD K ++ G KP+ VFG R+P  IPW  +GA+YVVESTGVFT               VIISAPS DAPM+V GVN   Y P
Sbjct:    3 VKVGINGFGRIGRLVIRNALEAQGVEVVAVNDPFIPLDYMVYMFKFDSVHGRYK-GTVEAKDGKLIIAG-KPIAVFGERDPASIPWGASGADYVVESTGVFTTIDKASAHLKGGAKKVIISAPSADAPMYVCGVNLDAYDP 141          
The following BLAST results are available for this feature:
BLAST of CX289900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
G3PC_TOBAC1.453e-5780.60Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR5.522e-5775.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA1.780e-4762.24Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU1.411e-4475.44Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRYCU2.331e-3957.45Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_DEBHA3.975e-3955.24Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3PC_GRAVE3.975e-3955.63Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRYNE2.577e-3857.75Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CANAL2.577e-3856.64Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_OMPOL4.395e-3858.16Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]

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Properties
Property NameValue
Genbank descriptionC02018C11SK IF1 Citrus clementina cDNA clone C02018C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289900 ID=CX289900; Name=CX289900; organism=Citrus clementina; type=EST; length=519bp
AATTCGGCACGAGGGGCTCTCTCTACTCTCTACAACTTTCTTCACCACTC
TTTCACCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCG
GAATCAACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTG
CAGAGGGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAAC
CGATTACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGA
AGCACCATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAG
AAGCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGC
TGAGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACA
AGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATC
TCAGCCCCCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCA
CGAGTACAAACCAGAGCTC
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