CX289900

Overview
NameCX289900
Unique NameCX289900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3P_STRP1 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=gap PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   91 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF 393
            VK+GINGFGRIGRL  R I   + VE+  +ND     + + ++ KYD+  G++    ++VK+    + G   + V   R+PE I WA  G E V+E+TG F
Sbjct:    3 VKVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRF-DGTVEVKEGGFEVNGNF-IKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: G3P_STREQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equisimilis GN=gap PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   91 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF 393
            VK+GINGFGRIGRL  R I   + VE+  +ND     + + ++ KYD+  G++    ++VK+    + G   + V   R+PE I WA  G E V+E+TG F
Sbjct:    3 VKVGINGFGRIGRLAFRRIQNVEGVEVTRIND-LTDPNMLAHLLKYDTTQGRF-DGTVEVKEGGFEVNGNF-IKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: E4PD_SALAR (D-erythrose-4-phosphate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   91 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 516
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   +   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+++ + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHEQTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: E4PD_VIBFM (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=epd PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   91 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP------VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP--SKDAPMFVVGVNEHEYKPE 516
            +++ INGFGRIGR V R + +   RD +E+VAVN+     + M ++F+YDS HG+++H   KV  D+  L+ + P      V +    +   +PW     + +++ TGV+                V+ S P  S      + GVN     PE
Sbjct:    2 LRVAINGFGRIGRSVLRALYESDKRDKIEVVAVNE-LSQPEAMAHLFQYDSTHGRFQH---KVTHDQEYLYIDLPNGSQDKVRILHQADLSLLPWQSLEVDLILDCTGVYGSKADGEKHINAGAKKVLFSHPGGSDLDNTIIYGVNHDTLLPE 150          
BLAST of CX289900 vs. ExPASy Swiss-Prot
Match: E4PD_SHELP (D-erythrose-4-phosphate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=epd PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   91 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK---DAPMFVVGVNEHEYKPE 516
            +K+ ING+GRIGR + R + +   RD +++VA+N+     + M ++ +YD+ HG+++       D   +  G+  + +    + E++PW     + V E+TG                  V+IS PS    DA + V GVN  + K E
Sbjct:    2 IKVAINGYGRIGRSILRALYESGKRDQIQIVAINE-LANPEAMLHLTQYDTTHGRFQ--SPASLDANVMTIGDDRIQLLHEADAEKLPWRSLDIDIVFEATGALIDRQACEAHIRAGAKQVLISHPSSGDVDATI-VYGVNHQDLKAE 145          
The following BLAST results are available for this feature:
BLAST of CX289900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
G3P_STRP14.580e-1139.60Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STREQ4.580e-1139.60Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
E4PD_SALAR5.982e-1130.41D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_VIBFM7.813e-1130.07D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_SHELP7.813e-1128.38D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionC02018C11SK IF1 Citrus clementina cDNA clone C02018C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289900 ID=CX289900; Name=CX289900; organism=Citrus clementina; type=EST; length=519bp
AATTCGGCACGAGGGGCTCTCTCTACTCTCTACAACTTTCTTCACCACTC
TTTCACCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCG
GAATCAACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTG
CAGAGGGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAAC
CGATTACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGA
AGCACCATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAG
AAGCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGC
TGAGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACA
AGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATC
TCAGCCCCCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCA
CGAGTACAAACCAGAGCTC
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