CX290054

Overview
NameCX290054
Unique NameCX290054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.885e-25
Identity = 62/140 (44.29%), Postives = 86/140 (61.43%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSR---NVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD+ FNAKLSDFGL+    T      + K+ GT GY APEY+  G+LT KSDVY+FGVVLLEL+ GRR ++  +     S+V WA P L D+ KL  I+D  +      K  +  A +A+ C+ P+   RP +++VL +L
Sbjct:  227 LDADFNAKLSDFGLAKAGPTGDNTHVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRAMDNSNGGNEYSLVDWATPYLGDKRKLFRIMDTKLGGQYPQKGAFTAANLALQCLNPDAKLRPKMSEVLVTL 366          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.236e-24
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLV 440
            LDS  N  LSD GL+    T +  +  +   GY APE  + G+ + KSD+Y+FGVV+LELL GR+P +       QS+V WA PQL D   L  +VDP ++    +K L + A V  LC+QPEP +RP +++V+ +L+ LV
Sbjct:  552 LDSELNPHLSDSGLASFLPTANELLNQTDE-GYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLV 691          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.921e-24
Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLV 440
            LDS  N  LSD GL+    T +  +  +   GY APE  + G+ + KSDVY+FGVV+LELL GR+P +       QS+V WA PQL D   L  +VDP ++    +K L + A V  LC+QPEP +RP +++V+ +L+ LV
Sbjct:  555 LDSELNPHLSDSGLASFLPTANELLNQNDE-GYSAPETSMSGQYSLKSDVYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALGKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLV 694          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.498e-24
Identity = 62/138 (44.93%), Postives = 89/138 (64.49%), Query Frame = 3
Query:   36 AKLSDFGLSVTA---GTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLV 440
            AK++DF LS  A     +  + ++ GT GY APEY + G+L  KSDVY+FGVVLLELL GR+PV+   P   QS+VTWA P+L++  K+   VD  +      K + ++AAVA LC+Q E  +RP ++ V+ +L PL+
Sbjct:  217 AKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSE-DKVKQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLL 353          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.508e-23
Identity = 54/139 (38.85%), Postives = 86/139 (61.87%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNV--KISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD  +NAK+SDFGL+   G++S  V  ++ GT GYVAPEY   G L +KSD+Y+FG++++E++ GR PV+   P    ++V W    + +R +   +VDP I +    K L +V  VA+ C+ P+ + RP +  ++H L
Sbjct:  288 LDRQWNAKVSDFGLAKLLGSESSYVTTRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQGETNLVDWLKSMVGNR-RSEEVVDPKIPEPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHML 425          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.734e-22
Identity = 60/141 (42.55%), Postives = 82/141 (58.16%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLV 440
            LD+  N +LSD+GLS      S+N+      GY APE       T KSDVY+FGVV+LELL GR P +   P   +S+V WA PQL D   L NI DP +      K L + A +  LC+Q EP +RP +++V+ +L+ +V
Sbjct:  540 LDADLNPRLSDYGLSKFYLRTSQNLGE----GYNAPEARDPSAYTPKSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRWATPQLHDIDALSNIADPALHGLYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEALVRMV 676          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.663e-22
Identity = 58/140 (41.43%), Postives = 87/140 (62.14%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTA--GTQSR-NVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD+ +NAKLSDFGL+     G  S  + ++ GT GY APEY+  G L  +SDVY+FGV+LLE+L G+R ++   P + +++V WA P LT + K+  IVD  +      +   ++A+VAV C+  EP  RP +  V+ +L
Sbjct:  210 LDADYNAKLSDFGLARDGPMGDLSYVSTRVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLLEILSGKRALDHNRPAKEENLVDWARPYLTSKRKVLLIVDNRLDTQYLPEEAVRMASVAVQCLSFEPKSRPTMDQVVRAL 349          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.090e-22
Identity = 57/140 (40.71%), Postives = 86/140 (61.43%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTA---GTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD S  AK++DFG S  A   G    ++++ GT GY+ PEY    +L++KSDV++FGVVLLE++ GR P+    P    S+V WA P +   SK+  IVDP I+     + L++V  VA+ C++P  +YRP + D++  L
Sbjct:  729 LDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRVEWSLVEWAKPYIR-ASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVREL 867          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.090e-22
Identity = 57/140 (40.71%), Postives = 86/140 (61.43%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTA---GTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD S  AK++DFG S  A   G    ++++ GT GY+ PEY    +L++KSDV++FGVVLLE++ GR P+    P    S+V WA P +   SK+  IVDP I+     + L++V  VA+ C++P  +YRP + D++  L
Sbjct:  730 LDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIR-ASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVREL 868          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.954e-22
Identity = 54/140 (38.57%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRN---VKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LDS+++AKLSDFGL+       ++    +I GT GY APEY+  G L  KSDV+AFGVVLLE++ G        P   +S+V W  P+L+++ ++  I+D  I+     K   ++A + + CI+P+P  RP + +V+  L
Sbjct:  226 LDSNYDAKLSDFGLAKLGPADEKSHVTTRIMGTYGYAAPEYMATGHLYVKSDVFAFGVVLLEIMTGLTAHNTKRPRGQESLVDWLRPELSNKHRVKQIMDKGIKGQYTTKVATEMARITLSCIEPDPKNRPHMKEVVEVL 365          
The following BLAST results are available for this feature:
BLAST of CX290054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
APK2A_ARATH5.885e-2544.29Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
SRF6_ARATH2.236e-2442.55Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF7_ARATH2.921e-2443.26Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
Y2706_ARATH8.498e-2444.93Probable receptor-like protein kinase At2g47060 OS... [more]
Y1154_ARATH5.508e-2338.85Probable serine/threonine-protein kinase At1g01540... [more]
SRF5_ARATH2.734e-2242.55Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
BIK1_ARATH4.663e-2241.43Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
NORK_PEA6.090e-2240.71Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
NORK_MEDTR6.090e-2240.71Nodulation receptor kinase OS=Medicago truncatula ... [more]
CX32_ARATH7.954e-2238.57Probable serine/threonine-protein kinase Cx32, chl... [more]

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Properties
Property NameValue
Genbank descriptionC02020A05SK IF1 Citrus clementina cDNA clone C02020A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290054 ID=CX290054; Name=CX290054; organism=Citrus clementina; type=EST; length=602bp
GGAATTCGGCACGAGGGCTGGATTCCAGTTTTAATGCAAAGCTTTCAGAT
TTTGGCCTTTCTGTGACTGCTGGAACCCAGAGTAGGAATGTTAAGATCTC
TGGAACTCTGGGTTATGTTGCCCCGGAGTACCTATTAGAAGGAAAACTAA
CTGATAAAAGTGATGTATATGCTTTCGGAGTTGTATTGCTGGAACTTTTG
ATGGGGAGAAGGCCTGTGGAAAAGATGTCACCAACTCAATGTCAATCAAT
GGTCACATGGGCCATGCCTCAGCTCACCGATAGATCAAAGCTTCCAAACA
TTGTGGATCCAGTAATTAGAGACACAATGGATTTAAAGCACTTATACCAG
GTAGCCGCTGTGGCAGTGCTATGTATACAACCTGAACCAAGTTATAGGCC
ATTGATAACCGACGTTCTGCATTCCCTCATTCCTCTTGTACCTACCGACC
TTGGAGGGTCACTCCGAGTGACCTAACCACAAATGCTTGGTTTGTAAATT
TGCCCAGCATGTCAGCTAGCATCAAATGTCTGGCTTATTACTGGTTTCCT
CAAGTGCCTGATCATTCTTTTAGGACAACAGTTTCCTTCAGGGAATTTAG
AT
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