CX290054

Overview
NameCX290054
Unique NameCX290054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16
Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNVKIS--GTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD    AK++DFGLS        N+ I+  GT GY+ PEYL   KLT+KSDVYAFGVVLLE+L  R  ++   P +  ++  W M     +  +  I+DP +   ++   L +   +A  C++     RP + DV+  L
Sbjct:  621 LDEHNIAKVADFGLSKIHNQDESNISINIKGTFGYLDPEYLQTHKLTEKSDVYAFGVVLLEVLFARPAIDPYLPHEEVNLSEWVM-FCKSKGTIDEILDPSLIGQIETNSLKKFMEIAEKCLKEYGDERPSMRDVIWDL 758          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 47/135 (34.81%), Postives = 79/135 (58.52%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNVK--ISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDV 416
            LD  + AK+SDFG S +      ++   ++GT GY+ PEY    + TDKSDVY+FGVVL+EL+ G +P   M P + + +V+    +   ++++ +IVD  I++   L+ +  VA +A  C+  +   RP + +V
Sbjct:  554 LDEKYRAKVSDFGTSRSINVDQTHLTTLVAGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELITGEKPFSVMRPEENRGLVS-HFNEAMKQNRVLDIVDSRIKEGCTLEQVLAVAKLARRCLSLKGKKRPNMREV 687          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNVK--ISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRP 401
            L  +F A L+DFGL+        +V   + GTLGY+ PEY      T K DVY+FGVVLLELL GRRP++   P   + +++W +   T++ +   I DP I D    + +  V  +A  C+   P  RP
Sbjct:  877 LSDTFVAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGRRPMDVCKPRGSRDLISWVLQMKTEKRE-SEIFDPFIYDKDHAEEMLLVLEIACRCLGENPKTRP 1005          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSR---NVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD +F AK+SDFGLS    +      +  + G+ GY+ PEY    +LT+KSDVY+FGVVL E +  R  +    P    ++  WA+     R+ L +I+D  +R     + L +   +A  C+  E   RP++ +VL SL
Sbjct:  652 LDENFVAKMSDFGLSKAGPSMDHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWALSWQKQRN-LESIIDSNLRGNYSPESLEKYGEIAEKCLADEGKNRPMMGEVLWSL 790          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: WAKLL_ARATH (Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 52/139 (37.41%), Postives = 78/139 (56.12%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRN--VKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD  + AK+SDFG S +      +    ISGT+GYV PEY      T+KSDVY+FGVVL+EL+ G +PV  +S TQ  + +          ++L  I+D  IR+   L+ +  VA +A+ C++     RP + +V  +L
Sbjct:  587 LDEKYRAKVSDFGTSRSVSIDHTHWTTVISGTVGYVDPEYYGSSHFTEKSDVYSFGVVLVELITGEKPVITLSETQEITGLADYFRLAMRENRLFEIIDARIRNDCKLEQVIAVANLALRCLKKTGKTRPDMREVSTAL 725          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 48/137 (35.04%), Postives = 76/137 (55.47%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD   + +++D GL+     +      S   GY APE +  G  T +SDV++ GVV+LELL GRRP ++  P   Q++  WA+P+L D   L  +VDP +     +K L + A +    +Q EP +RP I++++  L
Sbjct:  633 LDGKLSVRVADSGLAYMLPPRPT----SQMAGYAAPE-VEYGSYTCQSDVFSLGVVMLELLTGRRPFDRTRPRGHQTLAQWAIPRLHDIDALTRMVDPSLHGAYPMKSLSRFADIISRSLQMEPGFRPPISEIVQDL 764          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 47/141 (33.33%), Postives = 82/141 (58.16%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNVK--ISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVE--KMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD  F A + DFGL+     +  +V   + GT+G++APEYL  GK ++K+DV+ +G++LLEL+ G+R  +  +++      ++ W    L ++ KL  +VDP ++       + Q+  VA+LC Q  P  RP +++V+  L
Sbjct:  440 LDEEFEAVVGDFGLARLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEK-KLEMLVDPDLQSNYTEAEVEQLIQVALLCTQSSPMERPKMSEVVRML 579          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: CRK42_ARATH (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 51/144 (35.42%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNVK--ISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTM-----DLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD   N K++DFGL+   G    ++   I+GTLGY+APEY++ G+LT+K+DVY+FGV++LE+  G R    +  T       W +  L   ++L   +DP ++D             +V  V +LC Q  PS RP + +V+  L
Sbjct:  448 LDDQLNPKIADFGLARCFGLDKTHLSTGIAGTLGYMAPEYVVRGQLTEKADVYSFGVLVLEIACGTRINAFVPETGHLLQRVWNLYTL---NRLVEALDPCLKDEFLQVQGSEAEACKVLRVGLLCTQASPSLRPSMEEVIRML 588          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.994e-16
Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLS--VTAGTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD +  AK++DFGLS  V  G    +  + G+ GY+ PEY    +LTDKSDVY+FGVVLLE L  R  +    P +  ++  WAM     +  L  I+DP +   ++ + + + A  A  C+      RP + DVL +L
Sbjct:  657 LDEALVAKVADFGLSKDVAFGQNHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPQLPREQVNLAEWAM-LWKQKGLLEKIIDPHLVGAVNPESMKKFAEAAEKCLADYGVDRPTMGDVLWNL 794          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.994e-16
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTA--GTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTW-AMPQLTDRSKLPNIVDPVI-RDTMDLKHLYQVAAVAVLCIQPEPSYRPLI---TDVLHSLIPL 437
            L     AK++DFGL   A  G  S   +I+GT GY+APEY + G++T K DVY+FGV+L+EL+ GR+ +++  P +   +V+W     +   +     +D  I  D   L  ++ VA +A  C   EP  RP +    ++L SL+ L
Sbjct:  725 LGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRKSLDESQPEESIHLVSWFKRMYINKEASFKKAIDTTIDLDEETLASVHTVAELAGHCCAREPYQRPDMGHAVNILSSLVEL 871          
The following BLAST results are available for this feature:
BLAST of CX290054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
Y2232_ARATH2.242e-1636.69Probable receptor-like protein kinase At2g23200 OS... [more]
WAKLI_ARATH2.927e-1634.81Wall-associated receptor kinase-like 22 OS=Arabido... [more]
PSKR1_DAUCA2.927e-1637.69Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
Y1357_ARATH3.823e-1635.00Probable receptor-like protein kinase At1g30570 OS... [more]
WAKLL_ARATH3.823e-1637.41Putative wall-associated receptor kinase-like 13 O... [more]
SUB_ARATH3.823e-1635.04Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
SERK2_ARATH3.823e-1633.33Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
CRK42_ARATH3.823e-1635.42Cysteine-rich receptor-like protein kinase 42 OS=A... [more]
Y2214_ARATH4.994e-1636.69Probable receptor-like protein kinase At2g21480 OS... [more]
TMK1_ARATH4.994e-1635.37Probable receptor protein kinase TMK1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC02020A05SK IF1 Citrus clementina cDNA clone C02020A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290054 ID=CX290054; Name=CX290054; organism=Citrus clementina; type=EST; length=602bp
GGAATTCGGCACGAGGGCTGGATTCCAGTTTTAATGCAAAGCTTTCAGAT
TTTGGCCTTTCTGTGACTGCTGGAACCCAGAGTAGGAATGTTAAGATCTC
TGGAACTCTGGGTTATGTTGCCCCGGAGTACCTATTAGAAGGAAAACTAA
CTGATAAAAGTGATGTATATGCTTTCGGAGTTGTATTGCTGGAACTTTTG
ATGGGGAGAAGGCCTGTGGAAAAGATGTCACCAACTCAATGTCAATCAAT
GGTCACATGGGCCATGCCTCAGCTCACCGATAGATCAAAGCTTCCAAACA
TTGTGGATCCAGTAATTAGAGACACAATGGATTTAAAGCACTTATACCAG
GTAGCCGCTGTGGCAGTGCTATGTATACAACCTGAACCAAGTTATAGGCC
ATTGATAACCGACGTTCTGCATTCCCTCATTCCTCTTGTACCTACCGACC
TTGGAGGGTCACTCCGAGTGACCTAACCACAAATGCTTGGTTTGTAAATT
TGCCCAGCATGTCAGCTAGCATCAAATGTCTGGCTTATTACTGGTTTCCT
CAAGTGCCTGATCATTCTTTTAGGACAACAGTTTCCTTCAGGGAATTTAG
AT
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