CX290056

Overview
NameCX290056
Unique NameCX290056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14443 contig Ccv1_Contig14443:141..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28
Identity = 68/165 (41.21%), Postives = 104/165 (63.03%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQ 511
            K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE+S++ ++ T+ERY +   +     +  E   Q  + E A + ++I  I+ S R+L+G+ +GS +            RS+  IR++K +L   ++  ++++E  L  DN  L  K  +
Sbjct:   25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAE 189          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28
Identity = 78/164 (47.56%), Postives = 98/164 (59.76%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERY----YRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IE   +RQVTF+KRRNG+LKKAYELSVLCDAEVA+IIFS +G+LYEF SSS M KTLERY    Y   E     R  +E   QQ   E   +  + E ++ SQR LLG+DLG   +            SL+ IR+ + QL  +Q+   + KE  L E N  L
Sbjct:    9 KRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQ---EYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTL 169          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27
Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFS--SSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLC 496
            K+IEN T+RQVTFSKRR G+LKKA+ELSVLCDAE+ +IIFS  G+L+E+S  SS M+K +ERY + +  R  + +      Q L  E+  M  + E ++ + R+++G+DL S T             +   +R+RK QL  +Q+  L+ KER+L + N+ LC
Sbjct:    9 KRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITEYDN-----QHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLC 165          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27
Identity = 76/184 (41.30%), Postives = 110/184 (59.78%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYT-EERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL---------CIKCGQKPWQQSTQ 535
            K+IEN  +RQVTFSKRR G+LKKA+E+SVLCDAEVA+++FS KG+L+E+S+ S M+K LERY RY+  ERQ+     +        E   +  KIE +E +QR  LG+DL + +             +L+ IR RK QL  E + +L++KE+ + E N+ L          ++  Q+ W Q  Q
Sbjct:    9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESD-VNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNQ 191          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.856e-27
Identity = 73/187 (39.04%), Postives = 118/187 (63.10%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERY--YRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQS 568
            K+IEN  +RQVTFSKRR+G+LKKA+E+SVLCDAEVA+I+FS KG+L+E+S+ S M++ LERY  Y Y++++ + R+  +     L+H  A +  ++E +E ++R  +G+DL S +             +++SIR+RK Q   E +  L++K++ L + N  L  K  ++  +   Q  + V  CS S
Sbjct:    9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEH--AKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREKKTGQQEGQLV-QCSNS 192          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.424e-27
Identity = 74/181 (40.88%), Postives = 111/181 (61.33%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYT-EERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL---------CIKCGQKPWQQ 526
            K+IEN  +RQVTFSKRR G+LKKA+E+SVLCDAEVA+++FS KG+L+E+S+ S M+K LERY RY+  ERQ+     +        E   +  KIE +E +QR  LG+DL + ++            +L+ IR+RK QL ++ + +L+ KE+ + E N+ L          ++  Q+ W Q
Sbjct:    9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESD-VNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQ 188          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.424e-27
Identity = 73/177 (41.24%), Postives = 107/177 (60.45%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKE 544
            K IEN  +RQVTF+KRR  +LKKAYELSVLCDAEVA+IIFS +G+LYEF SS+ M KTLE+Y +       +   + R  Q  + E   +  ++E ++ SQR LLG+DLG   +            SLR IR+ + Q   +Q+  L+ +E++L E N  L     ++ +++S+Q  +
Sbjct:    9 KMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQK-CNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTL-----KRRFEESSQANQ 179          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.165e-27
Identity = 74/188 (39.36%), Postives = 118/188 (62.77%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERY--YRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQK---PWQQSTQRKEAVNNCS 562
            K+IEN  +RQVTFSKRR+G+LKKA+E+SVLCDAEVA++IFS KG+L+E+S+ S M+K LERY  Y Y++++ + R+  +     L+H  A +  ++E +E ++R  +G+DL S +             +++SIR+RK Q   E +  L++K+++L + N  L  K  ++      Q  Q  +  NN S
Sbjct:    9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEH--AKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQLIQCSNNSS 194          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.134e-27
Identity = 70/159 (44.03%), Postives = 103/159 (64.78%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IEN  +RQVTFSKR++G+LKKAYELSVLCDAEV++IIFS  G+LYEFS+  + +T+ERYYR  ++  +D + +E   Q L+ E+  +  K E +  + R L+G+DL   +             +L + R +K Q+  EQM +L+ KER L + N +L
Sbjct:    9 KRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYR-CKDNLLDNDTLED-TQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKL 165          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.051e-27
Identity = 64/165 (38.79%), Postives = 101/165 (61.21%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQ 511
            K+IEN T+RQVTF KRR+G+LKKAYELSVLCDAEVA+++FS +GRLYE+S++ +++T+ERY +   +        E   Q  + E A + ++I +++ S R L+G ++ +  +           + L  IRARK +L   ++  ++ +E  L  DN  L  K  +
Sbjct:   51 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAE 215          
The following BLAST results are available for this feature:
BLAST of CX290056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AG_ARATH4.883e-2841.21Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL9_SOLLC4.883e-2847.56Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
GGM13_GNEGN1.421e-2742.59MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AP1_ARATH1.421e-2741.30Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_ARATH1.856e-2739.04Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AP1_SINAL2.424e-2740.88Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AGL9_ARADE2.424e-2741.24Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL8_SINAL3.165e-2739.36Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL13_ARATH4.134e-2744.03Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
MAD58_ORYSJ7.051e-2738.79MADS-box transcription factor 58 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020A07SK IF1 Citrus clementina cDNA clone C02020A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290056 ID=CX290056; Name=CX290056; organism=Citrus clementina; type=EST; length=741bp
GAATTCGGCACGAGGGAAGAAAATAGAGAATGATACAAGCCGGCAAGTGA
CATTTTCAAAGCGTCGAAATGGGATGTTGAAGAAGGCTTACGAGCTTTCG
GTTCTTTGCGATGCTGAAGTTGCTGTTATTATCTTCTCACAGAAAGGAAG
GCTCTATGAGTTTTCAAGTTCTGAAATGCAAAAGACGTTAGAACGATACT
ATAGATACACAGAAGAAAGGCAAATTGACAGGAATGGAATGGAGCGATAC
ATGCAGCAATTGAAGCATGAAATAGCGAATATGATTGAGAAGATCGAGCA
TATTGAAGTTTCTCAACGGAAGCTTTTAGGACAGGACCTGGGTTCACGTA
CCAATGAGGAACTCCAAGAGCTTGATGACCAGCTAGAACGAAGCTTGCGC
AGCATCCGAGCAAGAAAGGCTCAGCTGTTCAATGAGCAGATGGGGCAACT
TAAAGAAAAGGAGAGACTTTTGCTGGAAGACAATGCCAGGTTATGTATAA
AGTGTGGACAAAAGCCATGGCAGCAATCGACCCAACGGAAAGAAGCTGTA
AACAATTGCAGCCAAAGTGGCCAGAGTTCAGACATCGAGACTGAATTGTT
CATCGGACTGCCTGAAATGCGTGCCGCATAGCCAGCAGCATTGGCTTCCT
GCAATCTTCTAGGCACGTAAACGACATTTGCAGCTCGTAAGTTGTAGCAC
ATCAATTAATTATTCTAACATGTAGAATAATTGCTCTTCTG
back to top