CX290056

Overview
NameCX290056
Unique NameCX290056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14443 contig Ccv1_Contig14443:141..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.203e-26
Identity = 71/185 (38.38%), Postives = 118/185 (63.78%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYT--EERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCS 562
            K+IEN  +RQVTFSKRR+G+LKKA+E+SVLCDAEV +I+FS KG+L+E+++ S M++ LERY RY+  E++ +  +        L+H    +  ++E ++ +Q+  +G+DL S +             +L+ IR+RK QL +E +  L++K+R L E N +L  K  ++  ++S Q+   +N+ S
Sbjct:    9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHR--KLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKER--EKSAQQISGINSSS 189          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 64/165 (38.79%), Postives = 102/165 (61.82%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQ 511
            K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE++++ ++ T+ERY +   +     +  E   Q  + E + + ++I  I+ + R ++G+ LGS T            + +  IR++K +L   ++  +++KE  L  +N  L  K  +
Sbjct:   25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAE 189          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26
Identity = 70/193 (36.27%), Postives = 117/193 (60.62%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEE--RQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSDIE 589
            K+I+N  +RQVTFSKRR G++KKA EL++LCDA+V +I+FS  GRLY+FSSS M+  +ERY    EE  R ++     ++ Q+   E+  + ++++++  + R+LLG+++ + T             SL SIR +K QL  E++ +L EK  L+ ++N+ L     +K +  + QR   ++    SG+S+  E
Sbjct:    9 KRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQR---EVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSEL-----RKKFNIAHQRNIELHKKLNSGESTSSE 193          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.571e-26
Identity = 75/166 (45.18%), Postives = 99/166 (59.64%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE-MQKTLERY------YRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IEN  SRQVTF+KRRNG+LKKAYELSVLCDAEVA+IIFS +GRL+EFS+S  M KTLERY          E        +  Y + LK     +  ++E ++ +QR LLG+DL   +             SL +IR+ K Q   +Q+ +LK KE+ L + N  L
Sbjct:    9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLK-----LKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDL 169          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.571e-26
Identity = 75/166 (45.18%), Postives = 99/166 (59.64%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE-MQKTLERY------YRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IEN  SRQVTF+KRRNG+LKKAYELSVLCDAEVA+IIFS +GRL+EFS+S  M KTLERY          E        +  Y + LK     +  ++E ++ +QR LLG+DL   +             SL +IR+ K Q   +Q+ +LK KE+ L + N  L
Sbjct:    9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLK-----LKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDL 169          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.571e-26
Identity = 68/196 (34.69%), Postives = 113/196 (57.65%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAV---NNCSQSGQSSDIETE 595
            K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA++IFS +GRLYE++++ ++ T+ERY +   +     +  E   Q  + E + +  +I  I+ S R ++G+ LGS              + +  +R++K +L   ++  ++++E  L  +N  L  K  +       Q++ +V       +SG SS  +++
Sbjct:   24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQGTTVYESGVSSHDQSQ 219          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.969e-26
Identity = 63/179 (35.20%), Postives = 107/179 (59.78%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVN 553
            K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE++++ ++ T+ERY +   +     +  E   Q  + E + +  +I +++   R +LG+ L + +            + +  IR++K +L   ++  ++++E  L  +N  L  K  +    Q  Q+++ +N
Sbjct:   25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMN 203          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 69/195 (35.38%), Postives = 108/195 (55.38%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPW---------QQSTQRKEAVNNCSQSGQ 574
            K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA++IFS +GRLYE++++ ++ T+ERY +   +        E   Q  + E + +  +I  I+   R +LG+ LGS              + +  +R++K ++   ++  ++++E  L  DN  L  K  ++            Q T  +  V +  QSGQ
Sbjct:   24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESSVIHQGTVYESGVTSSHQSGQ 218          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.018e-25
Identity = 74/203 (36.45%), Postives = 120/203 (59.11%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYT--EERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSDIETELFIGLPE 616
            K+IEN  +RQVTFSKRR+G+LKKA+E+SVLCDAEV +I+FS KG+L+E+++ S M++ LERY RY+  E + +  +        L+H  A +  ++E ++ +Q+  +G+DL S               +L+ IR+RK QL +E +  L++++R L E N +L  K  ++        KE         Q+ +I +  F+ LP+
Sbjct:    9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEH--AKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKER-------EKEVAQQNQWDQQNHEINSSTFV-LPQ 201          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.737e-25
Identity = 70/192 (36.46%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSDIET 592
            ++I+N TSRQVTFSKRRNG+LKKA ELS+LCDAEV +++FS  GRLYEFSS+ M+  ++RY    EE        E  + Q   E A++ +++ +++ S ++L+G++L                 SLR+IR RK  L   ++ +L  K  L+ ++N  L         QQ  +    +  C Q G +   E+
Sbjct:    9 RRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEELLGGNATSEIKIWQ--REAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLNVMS-QQKLELYNKLQACEQRGATDANES 197          
The following BLAST results are available for this feature:
BLAST of CX290056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AGL8_SOLLC1.203e-2638.38Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AG_PANGI2.680e-2638.79Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
MAD25_ORYSJ3.500e-2636.27MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MADS5_ORYSJ4.571e-2645.18MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI4.571e-2645.18MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL1_ARATH4.571e-2634.69Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_TOBAC5.969e-2635.20Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AGL5_ARATH7.796e-2635.38Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL8_SOLTU1.018e-2536.45Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD57_ORYSJ1.737e-2536.46MADS-box transcription factor 57 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC02020A07SK IF1 Citrus clementina cDNA clone C02020A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290056 ID=CX290056; Name=CX290056; organism=Citrus clementina; type=EST; length=741bp
GAATTCGGCACGAGGGAAGAAAATAGAGAATGATACAAGCCGGCAAGTGA
CATTTTCAAAGCGTCGAAATGGGATGTTGAAGAAGGCTTACGAGCTTTCG
GTTCTTTGCGATGCTGAAGTTGCTGTTATTATCTTCTCACAGAAAGGAAG
GCTCTATGAGTTTTCAAGTTCTGAAATGCAAAAGACGTTAGAACGATACT
ATAGATACACAGAAGAAAGGCAAATTGACAGGAATGGAATGGAGCGATAC
ATGCAGCAATTGAAGCATGAAATAGCGAATATGATTGAGAAGATCGAGCA
TATTGAAGTTTCTCAACGGAAGCTTTTAGGACAGGACCTGGGTTCACGTA
CCAATGAGGAACTCCAAGAGCTTGATGACCAGCTAGAACGAAGCTTGCGC
AGCATCCGAGCAAGAAAGGCTCAGCTGTTCAATGAGCAGATGGGGCAACT
TAAAGAAAAGGAGAGACTTTTGCTGGAAGACAATGCCAGGTTATGTATAA
AGTGTGGACAAAAGCCATGGCAGCAATCGACCCAACGGAAAGAAGCTGTA
AACAATTGCAGCCAAAGTGGCCAGAGTTCAGACATCGAGACTGAATTGTT
CATCGGACTGCCTGAAATGCGTGCCGCATAGCCAGCAGCATTGGCTTCCT
GCAATCTTCTAGGCACGTAAACGACATTTGCAGCTCGTAAGTTGTAGCAC
ATCAATTAATTATTCTAACATGTAGAATAATTGCTCTTCTG
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