CX290056

Overview
NameCX290056
Unique NameCX290056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.737e-25
Identity = 60/159 (37.74%), Postives = 101/159 (63.52%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            ++I+N TSRQVTFSKRRNG+ KKA EL++LCDAEV ++IFS  GRLYE+SS+ M+  ++RY +  +E+Q   N     ++  + E A++ +++ +++ + R+L+G+DL                 SLRS+R +K  +  +++ +L  K  L+ ++N  L
Sbjct:    9 RRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSE-LKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMEL 166          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.053e-25
Identity = 67/171 (39.18%), Postives = 104/171 (60.82%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYTEERQ-----IDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQ 511
            K+IEN TSRQVTF KRRNG+LKKAYEL++LCDAE+A+I+FS +GRLYEFS+ +  + T+ERY + +         ID N   +Y QQ   E A M  +I+ ++ + R L+G+ +G+ T            + +  IR++K +L   ++  ++++E  L  +N  L  K  +
Sbjct:    9 KRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNS-HQYFQQ---EAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAE 175          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.053e-25
Identity = 63/165 (38.18%), Postives = 99/165 (60.00%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQ 511
            K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE++++ ++ T+ERY +   +        E      + E A + ++I+ I+ S R L+G  L S +            +++  IR++K +L   ++   +++E  L  +N  L  K  +
Sbjct:    9 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAE 173          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.620e-25
Identity = 64/179 (35.75%), Postives = 104/179 (58.10%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVN 553
            K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE++++ ++ T+ERY +   +     +  E   Q  + E + +  +I +++   R  LG+ L +              + +  IRA+K +L   ++  ++++E  L  +N  L  K  +      T+R + +N
Sbjct:   25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAE------TERSQQMN 197          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.126e-24
Identity = 64/173 (36.99%), Postives = 102/173 (58.96%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIE-VSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKC-----GQKP 517
            K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE++++ ++ T+ERY +   +        E   Q  + E + + ++I  ++  + R ++G  + + +            + +  IRARK +L   ++  ++++E  L  DN  L  K      GQ+P
Sbjct:    9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQP 181          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.126e-24
Identity = 65/161 (40.37%), Postives = 95/161 (59.01%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS--SEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IEN T+RQVTFSKRR G+LKKA EL+VLCDA V V+IFS  G+++E+ S    +++ +E+Y   T     + N    + QQ+  E+  M  ++E +E   R+  G DL S T             S+  +RARK QL N+Q+  L+ KE++L + N  L
Sbjct:    9 KRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSHFEEIN----HDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFL 165          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.508e-24
Identity = 73/203 (35.96%), Postives = 120/203 (59.11%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYT--EERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSDIETELFIGLPE 616
            K+IEN  +RQVTFSKRR+G+LKKA+E+SVLCDAEV +I+FS KG+L+E+++ S M++ LERY RY+  E++ +  +        L  E A +  ++E ++ +++  +G+DL S               +L+ IR+RK QL +E +  L++++R L E N +L  K  ++        KE         Q+ +I +  F+ LP+
Sbjct:    9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTL--ENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKER-------EKEVEQQNQWDQQNHEINSSTFV-LPQ 201          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 64/162 (39.51%), Postives = 95/162 (58.64%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS--SEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLC 496
            K+IEN T+RQVTFSKRR G+LKKA EL+VLCDA V V+IFS  G+++E+ S    +++ +E Y   T     + N    + QQ+  E+  M  ++E ++   R+  G DL + T             S+  +RARK QL N+Q+  L+ KE +L + N+ LC
Sbjct:    9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEEIN----HDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLC 166          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 66/175 (37.71%), Postives = 104/175 (59.43%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFS-SSEMQKTLERYYR-----YTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQ 523
            K+IEN TSRQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE+S ++ ++ T++RY +      T    +     ++Y QQ   E A +  +I+ ++ + + L+G ++ + +            + +  IRARK +L   ++  + ++E  L  DN  L  K  ++  Q
Sbjct:    9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQ---ESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQQ 180          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 60/162 (37.04%), Postives = 100/162 (61.73%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK 502
            ++I++ TSRQVTFSKRR G++KKA EL++LCDAEV +IIFS  G+LY+F+SS M+  ++RY +   E+Q   N     ++  + E A + +++  ++ + R+++G+ L   +             SLR IR RK QL  +++ +L +K  L+ ++N  L  K
Sbjct:    9 QRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPASE-VKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRK 169          
The following BLAST results are available for this feature:
BLAST of CX290056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD27_ORYSJ1.737e-2537.74MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD21_ORYSJ5.053e-2539.18MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL11_ARATH5.053e-2538.18Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AG_PETHY8.620e-2535.75Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
MADS3_ORYSJ1.126e-2436.99MADS-box transcription factor 3 OS=Oryza sativa su... [more]
M17_MAIZE1.126e-2440.37MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
AGL8_SOLCO2.508e-2435.96Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD29_ORYSJ4.278e-2439.51MADS-box transcription factor 29 OS=Oryza sativa s... [more]
MAD13_ORYSJ7.297e-2437.71MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AGL21_ARATH9.530e-2437.04Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC02020A07SK IF1 Citrus clementina cDNA clone C02020A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290056 ID=CX290056; Name=CX290056; organism=Citrus clementina; type=EST; length=741bp
GAATTCGGCACGAGGGAAGAAAATAGAGAATGATACAAGCCGGCAAGTGA
CATTTTCAAAGCGTCGAAATGGGATGTTGAAGAAGGCTTACGAGCTTTCG
GTTCTTTGCGATGCTGAAGTTGCTGTTATTATCTTCTCACAGAAAGGAAG
GCTCTATGAGTTTTCAAGTTCTGAAATGCAAAAGACGTTAGAACGATACT
ATAGATACACAGAAGAAAGGCAAATTGACAGGAATGGAATGGAGCGATAC
ATGCAGCAATTGAAGCATGAAATAGCGAATATGATTGAGAAGATCGAGCA
TATTGAAGTTTCTCAACGGAAGCTTTTAGGACAGGACCTGGGTTCACGTA
CCAATGAGGAACTCCAAGAGCTTGATGACCAGCTAGAACGAAGCTTGCGC
AGCATCCGAGCAAGAAAGGCTCAGCTGTTCAATGAGCAGATGGGGCAACT
TAAAGAAAAGGAGAGACTTTTGCTGGAAGACAATGCCAGGTTATGTATAA
AGTGTGGACAAAAGCCATGGCAGCAATCGACCCAACGGAAAGAAGCTGTA
AACAATTGCAGCCAAAGTGGCCAGAGTTCAGACATCGAGACTGAATTGTT
CATCGGACTGCCTGAAATGCGTGCCGCATAGCCAGCAGCATTGGCTTCCT
GCAATCTTCTAGGCACGTAAACGACATTTGCAGCTCGTAAGTTGTAGCAC
ATCAATTAATTATTCTAACATGTAGAATAATTGCTCTTCTG
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