CX290056

Overview
NameCX290056
Unique NameCX290056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14443 contig Ccv1_Contig14443:141..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.773e-23
Identity = 58/165 (35.15%), Postives = 97/165 (58.79%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQ 511
            K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+++FS +GRLYE++++ ++ T+ERY +   +     +  E   Q  + E + +  +I ++    R ++G+ L                + +  IR++K +L   ++  ++++E  L  +N  L  K  +
Sbjct:   25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAE 189          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 64/158 (40.51%), Postives = 92/158 (58.23%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS--EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDN 484
            K+IEN TSRQVTFSKRR G+LKK +ELSVLCDA++ +IIFS KG+L+E+ S    M + + RY + T         +E    QL  E+A M     ++++S ++  G DL                 +L  IRARK +L  +QM  LK+ E++L ++N
Sbjct:   12 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASL----PVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKEN 165          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEK 460
            K+I+N TSRQVTFSKRR+G+ KKA ELS+LCDAEV +++FS   RLY+F+SS M+  +ERY    E+     N      +  + E A++ +++ +++   R+LLGQ L                 SL++IR RK  +  +Q+ +L  K
Sbjct:    9 KRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMNASSE-AKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 60/163 (36.81%), Postives = 98/163 (60.12%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS--EMQKTLERYYRYTE--ERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IEN+TSRQVTFSKRR+G++KK +ELSVLCDA++ +I+FS KG+L E+ +    M++ ++RY +         +R G      Q+  E+  M E+  +++++ ++  G DL +              +SL  +RARK +L +EQM  LK  E +L ++N  +
Sbjct:    9 KRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEM 171          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 64/159 (40.25%), Postives = 92/159 (57.86%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IEN  SRQVTFSKRR G+LKKA+ELSVLCDAEVAVI+FS+ G+L+EFSS+ M+KTL RY  Y     +     +   Q+   E+  + ++I  ++     + G+ L   +             SL S+R RK  L  +Q+ + + KE+    +N  L
Sbjct:    9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETL 167          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.830e-22
Identity = 62/153 (40.52%), Postives = 96/153 (62.75%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE--MQKTLERYYRYTEERQIDRNGMERYMQ---QLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEK 460
            ++IEN+ SRQVTFSKRR G+LKKA+E++VLCD +VA I+FS KG L+ ++SS   M++ LE+Y R+ E      N +E + +    + ++   +  +IE ++ SQR L+GQ+L S T             SL +IR+RK +L  E+   L++K
Sbjct:    9 RRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRH-ELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKK 160          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 61/158 (38.61%), Postives = 88/158 (55.70%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE--MQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDN 484
            KKIEN T+RQVTFSKRR G++KK  ELS+LCDA + +I+FS  G+L EF S +  M + ++RY      R  D +  +   +QL HE+  +  +  ++E+  R   G DL S               S+  +R RK +L  +Q+  L  K R+L EDN
Sbjct:    9 KKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQ---EQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDN 163          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.595e-21
Identity = 60/194 (30.93%), Postives = 107/194 (55.15%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSDIETEL 598
            K+IEN ++RQVT+SKRRNG+LKKA E+SVLCDA V+VIIF+  G+++EFSS+ +   L++Y++ T  R +D        + L +EI  + +  +++++  R L G+D+ S  +             L SIR ++    NE +  +++K + + E+  +L  +  Q       +    +    Q  ++ D +  +
Sbjct:    9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLLDAK-----HENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQ----NEVLRMMRKKTQSMEEEQDQLNCQLRQLEIATMNRNMGEIGEVFQQRENHDYQNHM 193          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.390e-21
Identity = 60/185 (32.43%), Postives = 101/185 (54.59%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSG 571
            +KI++ TSRQVTFSKRR G++KKA EL++LCDAEV +IIFS   +LY+F+SS ++ T+ER+     E Q   N     ++  + E   + +++  ++ + R+L G +L   +             SLR IR ++ Q+   ++ +L  K  L+  +N  L  K  +   +     K+A    + +G
Sbjct:    9 QKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFNTAKMEEQELMNPASE-VKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNG 192          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRY-TEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGS-RTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLC 496
            K+IE+ T RQVTFSKRR G LKKA EL+VLCDA+V V++FS KG+L++F S  +   +E ++RY    R        R  +Q+  EI  +  +I+ +E S R+  G+DL S  T             SL  + ARK +L ++Q+  ++   + + E N  LC
Sbjct:    9 KRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPV-ILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLC 169          
The following BLAST results are available for this feature:
BLAST of CX290056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AG_SOLLC2.773e-2335.15Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
FBP24_PETHY4.730e-2340.51MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD23_ORYSJ1.797e-2239.19MADS-box transcription factor 23 OS=Oryza sativa s... [more]
DEF21_ANTMA2.347e-2236.81MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
AGL15_BRANA2.347e-2240.25Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
MAD20_ORYSJ6.830e-2240.52MADS-box transcription factor 20 OS=Oryza sativa s... [more]
TT16_ARATH1.165e-2138.61Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
FBP1_PETHY2.595e-2130.93Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
AGL17_ARATH3.390e-2132.43Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MAD30_ORYSJ5.782e-2138.27MADS-box transcription factor 30 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC02020A07SK IF1 Citrus clementina cDNA clone C02020A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290056 ID=CX290056; Name=CX290056; organism=Citrus clementina; type=EST; length=741bp
GAATTCGGCACGAGGGAAGAAAATAGAGAATGATACAAGCCGGCAAGTGA
CATTTTCAAAGCGTCGAAATGGGATGTTGAAGAAGGCTTACGAGCTTTCG
GTTCTTTGCGATGCTGAAGTTGCTGTTATTATCTTCTCACAGAAAGGAAG
GCTCTATGAGTTTTCAAGTTCTGAAATGCAAAAGACGTTAGAACGATACT
ATAGATACACAGAAGAAAGGCAAATTGACAGGAATGGAATGGAGCGATAC
ATGCAGCAATTGAAGCATGAAATAGCGAATATGATTGAGAAGATCGAGCA
TATTGAAGTTTCTCAACGGAAGCTTTTAGGACAGGACCTGGGTTCACGTA
CCAATGAGGAACTCCAAGAGCTTGATGACCAGCTAGAACGAAGCTTGCGC
AGCATCCGAGCAAGAAAGGCTCAGCTGTTCAATGAGCAGATGGGGCAACT
TAAAGAAAAGGAGAGACTTTTGCTGGAAGACAATGCCAGGTTATGTATAA
AGTGTGGACAAAAGCCATGGCAGCAATCGACCCAACGGAAAGAAGCTGTA
AACAATTGCAGCCAAAGTGGCCAGAGTTCAGACATCGAGACTGAATTGTT
CATCGGACTGCCTGAAATGCGTGCCGCATAGCCAGCAGCATTGGCTTCCT
GCAATCTTCTAGGCACGTAAACGACATTTGCAGCTCGTAAGTTGTAGCAC
ATCAATTAATTATTCTAACATGTAGAATAATTGCTCTTCTG
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