CX290056

Overview
NameCX290056
Unique NameCX290056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS--EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK 502
            KKIEN T+RQVTFSKRR G+LKKA EL++LCDA++ VI+FS  G++YE+SS    +    +RY +    R  + +  +R +Q    E+  M ++   + +  R+ +G DL S T             SL  +R RK QL ++Q          LLE ++R+C K
Sbjct:    9 KKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDVQQRIIQ----EMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQ----------LLEMHSRVCNK 158          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 63/159 (39.62%), Postives = 92/159 (57.86%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IEN  SRQVTFSKRR+G+LKKA ELSVLCDAEVAVI+FS+ G+L+E+SS+ M++TL RY  +              +  LK +++ + EK  H++     L G+ L   T             +L ++R RK +L   Q+ + + KE+    +N  L
Sbjct:    9 KRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEK--HLQ-----LQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETL 160          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 56/159 (35.22%), Postives = 96/159 (60.38%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IEN ++RQVT+SKRRNG+LKKA E+SVLCDA V+VIIF+  G+++EFSS+ +   L++Y++ T  R  D        + L +EI  + +  +++++  R L G+D+ S  +             L SIR ++    N+ +  +++K + + E+  +L
Sbjct:    9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLWDAK-----HENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQ----NDLLRMMRKKTQSMEEEQDQL 158          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 57/160 (35.62%), Postives = 93/160 (58.13%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEE-RQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            KKI+N T+RQVTFSKRR G+ KKA ELSVLCDA+VA+IIFS  G+L+++SSS M++ LER   +++   ++D+  +E  + +     + + ++I       R++ G++L                  L  +  RK      ++ QL++K   L+E+N +L
Sbjct:    9 KKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVE-NSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKL 167          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 63/192 (32.81%), Postives = 106/192 (55.21%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEE-RQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVN--NCSQSGQSSD 583
            K+IE+  +RQVTFSKRR G+ KKA ELSVLCDA+VA+I+FS  G+L  F+SS M + +++Y  ++    + ++  ++  ++  K+  A++ E++    +  R++ G++L   +              L  +   K Q F EQ+ +L+ K   L E+N +L      +  Q S   K+ V+  N    GQSS+
Sbjct:    9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKY--AHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQL----RNQVSQISPAEKQVVDTENFVTEGQSSE 194          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 67/190 (35.26%), Postives = 103/190 (54.21%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE-MQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSD 583
            K+IEN +SRQVTFSKRRNG+++KA +LSVLCDA VA+++ S  G+LY FSS + + K L+   RY ++   D   ++   + L     N     E +E+   KL+G ++ + +             +L   RA+K +L  + +  LKEKE++L E+N  L  +        +    EA    S +GQ SD
Sbjct:    9 KRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILD---RYGKQHADDLKALDHQSKAL-----NYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGA----EAEMEMSPAGQISD 186          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 57/160 (35.62%), Postives = 93/160 (58.13%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEE-RQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            +KI+N T+RQVTFSKRR G+ KKA ELSVLCDA+VA+IIFS  G+L+EF SS M++ LER+   ++   ++D+  +E  + +   + A M ++I       R++ G++L                  L  +   K+     ++ +L++K   L+++N RL
Sbjct:    9 RKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQSKNLEKLDQPSLELQLVE-NSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRL 167          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.581e-18
Identity = 58/160 (36.25%), Postives = 86/160 (53.75%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            ++IEN   RQVTF KRR G+LKKA ELSVLCDA+V VIIFS +G+L+E +++  M   +ERY       Q++   ++R  Q  +  I  + E+I+ ++   R   G   G  T              +  IR  K Q+  +++  L+ KE +L E N  L
Sbjct:    9 RRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQR-QQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEML 167          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18
Identity = 49/159 (30.82%), Postives = 88/159 (55.35%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            ++I+N  +RQVTFSKRR G+ KKA ELS+LCDAEV +++FS  G+L++F+S+ M++ ++RY  +++  Q           +     A + E++    +  R++ G++L                  L S+   K++   +++  L+ K   L+E+N RL
Sbjct:   28 RRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRL 186          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18
Identity = 56/167 (33.53%), Postives = 93/167 (55.69%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE-MQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQK 514
            K+IEN +SRQVTFSKRRNG+++KA +LS+LC++ +AV++ S  G+LY+ +S + M K ++RY  +  +        E     L  +  N +   E +E+ Q KL   ++ + +             +L   RARK +L   ++  L++ E LL E+N  L  + G+K
Sbjct:    9 KRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHAD--------ELEALDLAEKTRNYLPLKELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQVGKK 167          
The following BLAST results are available for this feature:
BLAST of CX290056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD31_ORYSJ7.551e-2137.80MADS-box transcription factor 31 OS=Oryza sativa s... [more]
AGL15_ARATH9.862e-2139.62Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
GLOB_TOBAC2.869e-2035.22Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
JOIN_SOLLC8.349e-2035.63MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
MAD22_ORYSJ1.090e-1932.81MADS-box transcription factor 22 OS=Oryza sativa s... [more]
FLC_ARATH2.429e-1935.26MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
SVP_ARATH4.143e-1935.63MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD33_ORYSJ4.581e-1836.25MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD47_ORYSJ5.983e-1830.82MADS-box transcription factor 47 OS=Oryza sativa s... [more]
AGL31_ARATH5.983e-1833.53Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC02020A07SK IF1 Citrus clementina cDNA clone C02020A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290056 ID=CX290056; Name=CX290056; organism=Citrus clementina; type=EST; length=741bp
GAATTCGGCACGAGGGAAGAAAATAGAGAATGATACAAGCCGGCAAGTGA
CATTTTCAAAGCGTCGAAATGGGATGTTGAAGAAGGCTTACGAGCTTTCG
GTTCTTTGCGATGCTGAAGTTGCTGTTATTATCTTCTCACAGAAAGGAAG
GCTCTATGAGTTTTCAAGTTCTGAAATGCAAAAGACGTTAGAACGATACT
ATAGATACACAGAAGAAAGGCAAATTGACAGGAATGGAATGGAGCGATAC
ATGCAGCAATTGAAGCATGAAATAGCGAATATGATTGAGAAGATCGAGCA
TATTGAAGTTTCTCAACGGAAGCTTTTAGGACAGGACCTGGGTTCACGTA
CCAATGAGGAACTCCAAGAGCTTGATGACCAGCTAGAACGAAGCTTGCGC
AGCATCCGAGCAAGAAAGGCTCAGCTGTTCAATGAGCAGATGGGGCAACT
TAAAGAAAAGGAGAGACTTTTGCTGGAAGACAATGCCAGGTTATGTATAA
AGTGTGGACAAAAGCCATGGCAGCAATCGACCCAACGGAAAGAAGCTGTA
AACAATTGCAGCCAAAGTGGCCAGAGTTCAGACATCGAGACTGAATTGTT
CATCGGACTGCCTGAAATGCGTGCCGCATAGCCAGCAGCATTGGCTTCCT
GCAATCTTCTAGGCACGTAAACGACATTTGCAGCTCGTAAGTTGTAGCAC
ATCAATTAATTATTCTAACATGTAGAATAATTGCTCTTCTG
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