CX290056
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21 Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS--EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK 502 KKIEN T+RQVTFSKRR G+LKKA EL++LCDA++ VI+FS G++YE+SS + +RY + R + + +R +Q E+ M ++ + + R+ +G DL S T SL +R RK QL ++Q LLE ++R+C K Sbjct: 9 KKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDVQQRIIQ----EMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQ----------LLEMHSRVCNK 158
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21 Identity = 63/159 (39.62%), Postives = 92/159 (57.86%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493 K+IEN SRQVTFSKRR+G+LKKA ELSVLCDAEVAVI+FS+ G+L+E+SS+ M++TL RY + + LK +++ + EK H++ L G+ L T +L ++R RK +L Q+ + + KE+ +N L Sbjct: 9 KRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEK--HLQ-----LQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETL 160
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20 Identity = 56/159 (35.22%), Postives = 96/159 (60.38%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493 K+IEN ++RQVT+SKRRNG+LKKA E+SVLCDA V+VIIF+ G+++EFSS+ + L++Y++ T R D + L +EI + + +++++ R L G+D+ S + L SIR ++ N+ + +++K + + E+ +L Sbjct: 9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLWDAK-----HENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQ----NDLLRMMRKKTQSMEEEQDQL 158
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20 Identity = 57/160 (35.62%), Postives = 93/160 (58.13%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEE-RQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493 KKI+N T+RQVTFSKRR G+ KKA ELSVLCDA+VA+IIFS G+L+++SSS M++ LER +++ ++D+ +E + + + + ++I R++ G++L L + RK ++ QL++K L+E+N +L Sbjct: 9 KKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVE-NSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKL 167
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19 Identity = 63/192 (32.81%), Postives = 106/192 (55.21%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEE-RQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVN--NCSQSGQSSD 583 K+IE+ +RQVTFSKRR G+ KKA ELSVLCDA+VA+I+FS G+L F+SS M + +++Y ++ + ++ ++ ++ K+ A++ E++ + R++ G++L + L + K Q F EQ+ +L+ K L E+N +L + Q S K+ V+ N GQSS+ Sbjct: 9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKY--AHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQL----RNQVSQISPAEKQVVDTENFVTEGQSSE 194
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19 Identity = 67/190 (35.26%), Postives = 103/190 (54.21%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE-MQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSD 583 K+IEN +SRQVTFSKRRNG+++KA +LSVLCDA VA+++ S G+LY FSS + + K L+ RY ++ D ++ + L N E +E+ KL+G ++ + + +L RA+K +L + + LKEKE++L E+N L + + EA S +GQ SD Sbjct: 9 KRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILD---RYGKQHADDLKALDHQSKAL-----NYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGA----EAEMEMSPAGQISD 186
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19 Identity = 57/160 (35.62%), Postives = 93/160 (58.13%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEE-RQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493 +KI+N T+RQVTFSKRR G+ KKA ELSVLCDA+VA+IIFS G+L+EF SS M++ LER+ ++ ++D+ +E + + + A M ++I R++ G++L L + K+ ++ +L++K L+++N RL Sbjct: 9 RKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQSKNLEKLDQPSLELQLVE-NSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRL 167
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 4.581e-18 Identity = 58/160 (36.25%), Postives = 86/160 (53.75%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493 ++IEN RQVTF KRR G+LKKA ELSVLCDA+V VIIFS +G+L+E +++ M +ERY Q++ ++R Q + I + E+I+ ++ R G G T + IR K Q+ +++ L+ KE +L E N L Sbjct: 9 RRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQR-QQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEML 167
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18 Identity = 49/159 (30.82%), Postives = 88/159 (55.35%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493 ++I+N +RQVTFSKRR G+ KKA ELS+LCDAEV +++FS G+L++F+S+ M++ ++RY +++ Q + A + E++ + R++ G++L L S+ K++ +++ L+ K L+E+N RL Sbjct: 28 RRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRL 186
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18 Identity = 56/167 (33.53%), Postives = 93/167 (55.69%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE-MQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQK 514 K+IEN +SRQVTFSKRRNG+++KA +LS+LC++ +AV++ S G+LY+ +S + M K ++RY + + E L + N + E +E+ Q KL ++ + + +L RARK +L ++ L++ E LL E+N L + G+K Sbjct: 9 KRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHAD--------ELEALDLAEKTRNYLPLKELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQVGKK 167 The following BLAST results are available for this feature:
BLAST of CX290056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 118
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290056 ID=CX290056; Name=CX290056; organism=Citrus clementina; type=EST; length=741bpback to top |