CX290056

Overview
NameCX290056
Unique NameCX290056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14443 contig Ccv1_Contig14443:141..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKER 466
            K+IEN T+RQVT+SKRRNG+ KKA+EL+VLCDA V++I+FS   +L+E+ S +   K +   Y+   +  +     ER MQ+ K +   ++E   ++    ++ LG+ L                 + + +R RK +    Q+   K+K +
Sbjct:    9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYER-MQETKRK---LLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNK 155          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 41/112 (36.61%), Postives = 70/112 (62.50%), Query Frame = 2
Query:   20 KIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTN 355
            +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N     ++ L+ +  N  E  +  +  +   L +D  S+ N
Sbjct:   10 RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTN--SDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLN 119          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 41/112 (36.61%), Postives = 70/112 (62.50%), Query Frame = 2
Query:   20 KIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTN 355
            +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N     ++ L+ +  N  E  +  +  +   L +D  S+ N
Sbjct:   10 RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTN--SDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLN 119          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 41/112 (36.61%), Postives = 70/112 (62.50%), Query Frame = 2
Query:   20 KIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTN 355
            +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N     ++ L+ +  N  E  +  +  +   L +D  S+ N
Sbjct:   10 RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTN--SDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLN 119          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.353e-14
Identity = 34/68 (50.00%), Postives = 53/68 (77.94%), Query Frame = 2
Query:   20 KIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQ 223
            +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIFS   +LY+++S++M + L +Y  Y E  +
Sbjct:   10 RITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKYTEYNEPHE 77          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 34/73 (46.58%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 235
            ++I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    9 QRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 34/73 (46.58%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 235
            ++I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    9 QRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 34/73 (46.58%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 235
            ++I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    9 QRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 34/73 (46.58%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 235
            ++I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    9 QRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 2
Query:   20 KIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEH 301
            +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N           +I   + K EH
Sbjct:   10 RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESGTNS----------DIVEALNKKEH 93          
The following BLAST results are available for this feature:
BLAST of CX290056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AP3_ARATH1.379e-1432.45Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MEF2A_PONAB1.801e-1436.61Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE1.801e-1436.61Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK1.801e-1436.61Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2_DROME2.353e-1450.00Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA3.073e-1446.58Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT3.073e-1446.58Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE3.073e-1446.58Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN3.073e-1446.58Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2A_PIG3.073e-1440.43Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionC02020A07SK IF1 Citrus clementina cDNA clone C02020A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290056 ID=CX290056; Name=CX290056; organism=Citrus clementina; type=EST; length=741bp
GAATTCGGCACGAGGGAAGAAAATAGAGAATGATACAAGCCGGCAAGTGA
CATTTTCAAAGCGTCGAAATGGGATGTTGAAGAAGGCTTACGAGCTTTCG
GTTCTTTGCGATGCTGAAGTTGCTGTTATTATCTTCTCACAGAAAGGAAG
GCTCTATGAGTTTTCAAGTTCTGAAATGCAAAAGACGTTAGAACGATACT
ATAGATACACAGAAGAAAGGCAAATTGACAGGAATGGAATGGAGCGATAC
ATGCAGCAATTGAAGCATGAAATAGCGAATATGATTGAGAAGATCGAGCA
TATTGAAGTTTCTCAACGGAAGCTTTTAGGACAGGACCTGGGTTCACGTA
CCAATGAGGAACTCCAAGAGCTTGATGACCAGCTAGAACGAAGCTTGCGC
AGCATCCGAGCAAGAAAGGCTCAGCTGTTCAATGAGCAGATGGGGCAACT
TAAAGAAAAGGAGAGACTTTTGCTGGAAGACAATGCCAGGTTATGTATAA
AGTGTGGACAAAAGCCATGGCAGCAATCGACCCAACGGAAAGAAGCTGTA
AACAATTGCAGCCAAAGTGGCCAGAGTTCAGACATCGAGACTGAATTGTT
CATCGGACTGCCTGAAATGCGTGCCGCATAGCCAGCAGCATTGGCTTCCT
GCAATCTTCTAGGCACGTAAACGACATTTGCAGCTCGTAAGTTGTAGCAC
ATCAATTAATTATTCTAACATGTAGAATAATTGCTCTTCTG
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