CX290065

Overview
NameCX290065
Unique NameCX290065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:432..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.060e-44
Identity = 87/152 (57.24%), Postives = 109/152 (71.71%), Query Frame = 1
Query:   16 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            KP GR+V+GL+G  VPKTAENFRAL T GEKG+GY+G +FHR+IK+FMIQ             SIYG  F+DE+F ++H   G+LSMANAG +TNGSQFFI TV TPWLD RHVVFG V++G +VV  +E+V     D P+   +I+ SGEL
Sbjct:   31 KPLGRVVLGLYGKTVPKTAENFRALAT-GEKGFGYEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKSGEL 181          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 96/163 (58.90%), Postives = 109/163 (66.87%), Query Frame = 1
Query:    4 DIAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            +I  KPAGRIV GL+G  VPKT ENFRALCT GEKG G       YK   FHRII +FMIQ             SIYG  F DE+F +KH  PG+LSMANAGPNTNGSQFFI TV T WLD RH VFG VI+GMD+V+ LES+  S++  P    +I NSGEL
Sbjct:   37 EIDNKPAGRIVFGLYGKTVPKTVENFRALCT-GEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESI-GSQSGTPSKIAKISNSGEL 197          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 88/145 (60.69%), Postives = 102/145 (70.34%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS 420
            + G+PAGRIVM LF D  P+TAENFRALCT GEKG G       YK  SFHR+I  FM Q             SIYG+ F DE+F+ KH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V++GMDVV+ +E V +S
Sbjct:   12 VGGQPAGRIVMELFADTTPRTAENFRALCT-GEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS 155          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 94/162 (58.02%), Postives = 110/162 (67.90%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            I GK +GRIVM L+ DVVPKTA NFRALCT GE G G       +KG  FHRII +FMIQ             SIYG  F DE+F  KH GPGVLSMANAGPNTNGSQFF+CTVKT WLD +HVVFG V++G+DVV+ +ES   S++  P   C I + G+L
Sbjct:   12 IGGKASGRIVMELYDDVVPKTAGNFRALCT-GENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVES-NGSQSGKPVKDCMIADCGQL 171          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 92/162 (56.79%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            I G PAG+IVM L+ D  PKTAENFRALCT GEKG G       +KG SFHR+I +FM Q             SIYG+ FEDE+F  KH GPG+LSMANAG NTNGSQFFICTVKT WLD +HVVFG V++G+DVV+ +E + +S +  P  P  I + GE+
Sbjct:   13 IGGAPAGKIVMELYTDKTPKTAENFRALCT-GEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSS-SGKPTKPVVIADCGEI 172          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 94/155 (60.65%), Postives = 105/155 (67.74%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            I G  AGRIVM L  DVVPKTAENFR LCT  E+GYGYKGCSFHR+I +FM Q             SIYG  F DE+F LKH   G LSMAN+G NTNGSQFFICT KT WLDN+HVVFGHVI G +VVRK+E    S++  P     I + GEL
Sbjct:  147 IGGNDAGRIVMLLRADVVPKTAENFRQLCTH-EQGYGYKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERC-GSKSGTPSQKIVIYSCGEL 299          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 87/152 (57.24%), Postives = 107/152 (70.39%), Query Frame = 1
Query:   16 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            KP GRIV+GL+G  VPKTAENFRAL T GEKG+GY+G +FHR+IK FMIQ             SIYG  F DE+F L+H   G+LSMANAG +TNGSQFFI TV TPWLD RHVVFG V++G +VV ++E+V     D P    +I+ SG++
Sbjct:   47 KPLGRIVLGLYGKTVPKTAENFRALAT-GEKGFGYEGSTFHRVIKSFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVVEQIENVPKGPGDKPAETVKIVKSGQI 197          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 93/162 (57.41%), Postives = 108/162 (66.67%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            + G PAGRIVM L+ + VPKTAENFRALCT GEKG G       YKG +FHR+I +FM Q             SIYG  F DE FV K   PGVLSMANAGPNTNGSQFFICTV TPWLD +HVVFG V++GMDVV+ +E V T      KV  ++ + G+L
Sbjct:   12 VGGAPAGRIVMELYANEVPKTAENFRALCT-GEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKV-VKVADCGQL 171          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 92/162 (56.79%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            I G+PAGRIVM L+ D  P+TAENFRALCT GEKG G       +KG  FHR+I +FM Q             SIYGS FEDE+F  KH GPG+LSMANAG NTNGSQFFICTVKT WLD +HVVFG V++G+DVV+ +E V +S +  P  P  + + G+L
Sbjct:   12 IDGQPAGRIVMELYTDKTPRTAENFRALCT-GEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSS-SGKPTKPVVVADCGQL 171          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 89/158 (56.33%), Postives = 108/158 (68.35%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 480
            I  +  GR+V+GLFG  VPKT +NF AL T GEKG+GYK   FHR+IKDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT WLD +HVVFG V++GMDVVRK+ES +T   D P     I + G++ ++
Sbjct:   52 IGDEDIGRVVIGLFGKTVPKTVDNFVALAT-GEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKTDGRDKPLKDVTIADCGKIEVE 208          
The following BLAST results are available for this feature:
BLAST of CX290065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
PPIB_ASPOR6.060e-4457.24Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_DICDI1.034e-4358.90Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
CYPH_CATRO1.034e-4360.69Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYP3_CAEEL1.034e-4358.02Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
CP19B_ARATH1.034e-4356.79Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
PPIE_DROME1.350e-4360.65Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPIB_ASPFU1.350e-4357.24Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
CYPH_MAIZE1.350e-4357.41Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CP18C_ARATH1.763e-4356.79Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
PPIB_BOVIN2.303e-4356.33Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionC02020B04SK IF1 Citrus clementina cDNA clone C02020B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290065 ID=CX290065; Name=CX290065; organism=Citrus clementina; type=EST; length=722bp
GGAGATATTGCAGGTAAACCTGCAGGTAGAATAGTAATGGGCCTTTTTGG
AGATGTTGTTCCGAAAACAGCTGAGAACTTTCGTGCACTGTGTACAGCAG
GTGAGAAAGGATATGGTTACAAAGGATGCTCCTTCCACCGTATTATTAAA
GATTTTATGATCCAGGGAGGGGACTTCACTGAGGGAGATGGAACTGGAGG
CATCAGTATTTATGGTTCCAGCTTTGAAGATGAGAGCTTTGTCTTGAAGC
ATGTTGGACCTGGAGTATTAAGCATGGCCAATGCAGGTCCTAATACCAAT
GGGAGCCAATTTTTCATTTGCACAGTGAAGACACCATGGTTGGACAACCG
CCATGTTGTGTTTGGACATGTCATTGATGGAATGGACGTTGTGAGGAAAC
TTGAATCTGTAGAGACAAGCAGGACAGATTACCCAAAGGTGCCATGTAGA
ATTATCAATAGTGGAGAACTACCATTAGATGCCTGATCTGCCAGCTCTGA
TATCTTACCACAACCATAAAATACGACTTTTGTAATTCATCACTTTTGTG
GAGCCAAATGGTTTTTGTAACTGTTATCTACATGAAAGCATGTTCCGCTT
AGTTGAATTAGCTGAGAAACTCAAGAATAATACTCGGTAAGCTCATGGTA
GAGCTGAATATGTACTATTGTTCGGTTGAATGTATATGTGCAGATTCCAC
TTGTAGTAAACAGTCAATAATA
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