CX290065

Overview
NameCX290065
Unique NameCX290065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:432..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.007e-43
Identity = 88/152 (57.89%), Postives = 105/152 (69.08%), Query Frame = 1
Query:   25 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 480
            G+IVMGL+GDVVPKT ENFRALCT GE G GYKG  FHR+IK+FMIQ             SIYG  F DE+F LKH  P  LSMANAG +TNGSQFFI TV T WLD +HVVFG V++G D+V  +E+  T     PKV   I ++GE+P++
Sbjct:   46 GKIVMGLYGDVVPKTVENFRALCT-GETGKGYKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGEIPVE 196          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.007e-43
Identity = 87/157 (55.41%), Postives = 106/157 (67.52%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG----YGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            G P G IV+ LF DV P+TAENFR  CT   K      GYK C+FHR+IKDFMIQ            +SIYGS F DE+F LKH+GPG+LSMANAG +TNG QFFI   KT +LDN+HVVFG V+DGM  VRK+E+V T   + PK+P  ++  G+L
Sbjct:   27 GAPIGTIVIELFADVTPRTAENFRQFCTGEYKKDGVPNGYKNCTFHRVIKDFMIQGGDFCNGDGTGLMSIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 93/150 (62.00%), Postives = 104/150 (69.33%), Query Frame = 1
Query:   22 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            AGRI + L GDVVPKTAENFRALCT GE G+GYK  SFHRII  FM Q             SIYG  FEDE+FVLKH GPG LSMANAG NTNGSQFFICT KT WLD +HVVFG V+ GM+VVR++E    S +  P     I++ GEL
Sbjct:  168 AGRIEIELRGDVVPKTAENFRALCT-GEAGFGYKKSSFHRIIPQFMCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERC-GSASGKPSKRVVIVDCGEL 315          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 85/131 (64.89%), Postives = 95/131 (72.52%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 405
            G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG SFHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM +V  +E
Sbjct:   14 GEPLGRVCFELFADKVPKTAENFRALST-GEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAME 143          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 85/131 (64.89%), Postives = 96/131 (73.28%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 405
            G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG SFHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM++V  +E
Sbjct:   14 GEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.130e-43
Identity = 92/159 (57.86%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    4 DIAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 480
            +I GKP GRIV+GLFG  VPKTA NF  L     KG GY G  FHR+I DFMIQ             SIYG  F DE+F LKH G G LSMANAG +TNGSQFFI TVKTPWLD RHVVFG +++GMDVVRK+E  E    D PK    I  SG + +D
Sbjct:   36 EIGGKPIGRIVIGLFGKTVPKTATNFIELAKK-PKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVD 193          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.700e-43
Identity = 93/162 (57.41%), Postives = 110/162 (67.90%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            I G+PAGRI+M LF DV PKTAENFRALCT GEKG G       Y+G  FHR+I  FM+Q             SIYG+ F DE+F+ KH  PG+LSMANAGP TNGSQFFI TV TP LD +HVVFG V++GMDVVRK+E+ +T R D P    +I   G+L
Sbjct:   10 IGGQPAGRIIMELFPDV-PKTAENFRALCT-GEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIEATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.750e-43
Identity = 90/155 (58.06%), Postives = 106/155 (68.39%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            I    AGRIVM L  D+VP+TAENFRALCT GE+G+GY  C FHR+I  FM Q             SIYG  F+DE+F L+H G GVLSMAN+GPNTNGSQFFICT K  WLD +HVVFG V+DG +VV+K+ESV  S++   K P  I   GEL
Sbjct:  120 IGNGDAGRIVMELRSDIVPRTAENFRALCT-GERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESV-GSKSGKVKEPVIISRCGEL 272          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.750e-43
Identity = 87/158 (55.06%), Postives = 107/158 (67.72%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 480
            I  +  GR++ GLFG  VPKT +NF AL T GEKG+GYK   FHR+IKDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT WLD +HVVFG V++GM+VVRK+ES +T   D P     I + G++ ++
Sbjct:   52 IGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 208          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.750e-43
Identity = 88/150 (58.67%), Postives = 104/150 (69.33%), Query Frame = 1
Query:   25 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELP 474
            GRIV+GL+G  VPKTAENF+ L T GE GYGYKG +FHR+IK FMIQ             SIYG+ F DE+F L+H  PG+LSMANAG +TNGSQFFI TV TPWLD +HVVFG V++GMDVV K+E+  T     P V   I + G LP
Sbjct:   48 GRIVLGLYGKTVPKTAENFKQLAT-GENGYGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIENTPTGSRSKPSVDVVIADCGLLP 196          
The following BLAST results are available for this feature:
BLAST of CX290065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
PPIB_YARLI3.007e-4357.89Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
CYP11_CAEEL3.007e-4355.41Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPIE_RHIOR3.928e-4362.00Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIA_RAT3.928e-4364.89Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_CRIGR3.928e-4364.89Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
CYP5_CAEEL5.130e-4357.86Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CYPX_USEUD6.700e-4357.41Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIE_SCHMA8.750e-4358.06Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIB_HUMAN8.750e-4355.06Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
PPIB1_RHIOR8.750e-4358.67Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020B04SK IF1 Citrus clementina cDNA clone C02020B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290065 ID=CX290065; Name=CX290065; organism=Citrus clementina; type=EST; length=722bp
GGAGATATTGCAGGTAAACCTGCAGGTAGAATAGTAATGGGCCTTTTTGG
AGATGTTGTTCCGAAAACAGCTGAGAACTTTCGTGCACTGTGTACAGCAG
GTGAGAAAGGATATGGTTACAAAGGATGCTCCTTCCACCGTATTATTAAA
GATTTTATGATCCAGGGAGGGGACTTCACTGAGGGAGATGGAACTGGAGG
CATCAGTATTTATGGTTCCAGCTTTGAAGATGAGAGCTTTGTCTTGAAGC
ATGTTGGACCTGGAGTATTAAGCATGGCCAATGCAGGTCCTAATACCAAT
GGGAGCCAATTTTTCATTTGCACAGTGAAGACACCATGGTTGGACAACCG
CCATGTTGTGTTTGGACATGTCATTGATGGAATGGACGTTGTGAGGAAAC
TTGAATCTGTAGAGACAAGCAGGACAGATTACCCAAAGGTGCCATGTAGA
ATTATCAATAGTGGAGAACTACCATTAGATGCCTGATCTGCCAGCTCTGA
TATCTTACCACAACCATAAAATACGACTTTTGTAATTCATCACTTTTGTG
GAGCCAAATGGTTTTTGTAACTGTTATCTACATGAAAGCATGTTCCGCTT
AGTTGAATTAGCTGAGAAACTCAAGAATAATACTCGGTAAGCTCATGGTA
GAGCTGAATATGTACTATTGTTCGGTTGAATGTATATGTGCAGATTCCAC
TTGTAGTAAACAGTCAATAATA
back to top