CX290065

Overview
NameCX290065
Unique NameCX290065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:432..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLA (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates lar GN=PPIA PE=3 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 84/133 (63.16%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 405
            + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM++V  +E
Sbjct:   12 VDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_HUMAN (Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 84/133 (63.16%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 405
            + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM++V  +E
Sbjct:   12 VDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_GORGO (Peptidyl-prolyl cis-trans isomerase A OS=Gorilla gorilla gorilla GN=PPIA PE=3 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 84/133 (63.16%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 405
            + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM++V  +E
Sbjct:   12 VDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 84/133 (63.16%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 405
            + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM++V  +E
Sbjct:   12 VDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 89/154 (57.79%), Postives = 106/154 (68.83%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV--ETSRTDYPKV 441
            + GK AGRIVM L+ D  P+TAENFRALCT GE+G G       YKG SFHR+I  FM Q             SIYGS F+DE+F+ KH GPG+LSMANAG NTNGSQFFICT KT WLD +HVVFG V++G++VVR +E V  ++ RT  P V
Sbjct:   13 VGGKSAGRIVMELYADTTPETAENFRALCT-GERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVV 165          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.493e-42
Identity = 89/155 (57.42%), Postives = 102/155 (65.81%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM +V  +E   +      K    I N G+L
Sbjct:   12 VDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSK-KITIANCGQL 164          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 91/165 (55.15%), Postives = 106/165 (64.24%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG-------YGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 480
            I GK  G+I   LF D VPKTAENFRALCT GEKG         +KG SFHR+IKDFM+Q             SIYG  F DE+F   H  P +LSMANAGPNTNGSQFFI T +TP LDN+HVVFG ++ G  +VR++E  ET   D PK P  I++ GELP D
Sbjct:   12 IGGKTIGKIYFELFADKVPKTAENFRALCT-GEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGELPAD 175          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 84/130 (64.62%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   16 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 405
            +P GR+   LF D VPKTAENFRAL T GEKG+GYKG SFHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM++V  +E
Sbjct:   15 EPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.546e-42
Identity = 84/152 (55.26%), Postives = 107/152 (70.39%), Query Frame = 1
Query:   16 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            +P GR+VMGL+G  VP+T ENFRAL T GEKG+GY+G +FHR+IK+FMIQ             SIYG  F+DE+F LKH   G+LSMANAG +TNGSQFFI TV T WLD +HVVFG V++G +++ K+E+ +T   D P    +I  SGEL
Sbjct:   46 QPLGRVVMGLYGKTVPETTENFRALAT-GEKGFGYEGSAFHRVIKNFMIQGGDFTKGDGTGGKSIYGDRFKDENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKIAKSGEL 196          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.546e-42
Identity = 83/133 (62.41%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 405
            + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  FM Q             SIYG  F+DE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM++V  +E
Sbjct:   12 VDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143          
The following BLAST results are available for this feature:
BLAST of CX290065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
PPIA_HYLLA1.143e-4263.16Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HUMAN1.143e-4263.16Peptidyl-prolyl cis-trans isomerase A OS=Homo sapi... [more]
PPIA_GORGO1.143e-4263.16Peptidyl-prolyl cis-trans isomerase A OS=Gorilla g... [more]
PPIA_CERAE1.143e-4263.16Peptidyl-prolyl cis-trans isomerase A OS=Cercopith... [more]
CP19A_ARATH1.143e-4257.79Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
PPIA_RABIT1.493e-4257.42Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPID_YARLI1.949e-4255.15Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
PPIA_MOUSE1.949e-4264.62Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIB_GIBZE2.546e-4255.26Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
PPIA_PIG2.546e-4262.41Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020B04SK IF1 Citrus clementina cDNA clone C02020B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290065 ID=CX290065; Name=CX290065; organism=Citrus clementina; type=EST; length=722bp
GGAGATATTGCAGGTAAACCTGCAGGTAGAATAGTAATGGGCCTTTTTGG
AGATGTTGTTCCGAAAACAGCTGAGAACTTTCGTGCACTGTGTACAGCAG
GTGAGAAAGGATATGGTTACAAAGGATGCTCCTTCCACCGTATTATTAAA
GATTTTATGATCCAGGGAGGGGACTTCACTGAGGGAGATGGAACTGGAGG
CATCAGTATTTATGGTTCCAGCTTTGAAGATGAGAGCTTTGTCTTGAAGC
ATGTTGGACCTGGAGTATTAAGCATGGCCAATGCAGGTCCTAATACCAAT
GGGAGCCAATTTTTCATTTGCACAGTGAAGACACCATGGTTGGACAACCG
CCATGTTGTGTTTGGACATGTCATTGATGGAATGGACGTTGTGAGGAAAC
TTGAATCTGTAGAGACAAGCAGGACAGATTACCCAAAGGTGCCATGTAGA
ATTATCAATAGTGGAGAACTACCATTAGATGCCTGATCTGCCAGCTCTGA
TATCTTACCACAACCATAAAATACGACTTTTGTAATTCATCACTTTTGTG
GAGCCAAATGGTTTTTGTAACTGTTATCTACATGAAAGCATGTTCCGCTT
AGTTGAATTAGCTGAGAAACTCAAGAATAATACTCGGTAAGCTCATGGTA
GAGCTGAATATGTACTATTGTTCGGTTGAATGTATATGTGCAGATTCCAC
TTGTAGTAAACAGTCAATAATA
back to top