CX290065

Overview
NameCX290065
Unique NameCX290065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:432..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.815e-41
Identity = 83/132 (62.88%), Postives = 95/132 (71.97%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 408
            G+  GRIVM L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q             SIYG  F DE+F LKH  PG+LSMANAG NTNGSQFFICT  T WLD +HVVFG V  G+D+++K+ES
Sbjct:   14 GENLGRIVMELRADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVES 144          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 167.933 bits (424), Expect = 4.801e-41
Identity = 95/164 (57.93%), Postives = 106/164 (64.63%), Query Frame = 1
Query:    4 DIAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            DI G+  GRIV+ LF D+VPKTAENFRALCT GEKG G        +KGC FHRIIK FMIQ             SIYG  FEDE+F  KH   G+LSMANAG NTNGSQFFI TV TP LD +HVVFG VI GM V + LE+VE  + + P   C I   GEL
Sbjct:   23 DIGGERVGRIVLELFADIVPKTAENFRALCT-GEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.271e-41
Identity = 87/158 (55.06%), Postives = 108/158 (68.35%), Query Frame = 1
Query:   19 PAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            P GR+V  L+ D+VPKTAENFRALCT GEKG G       YKG SFHR+IK+FM+Q             SIYG +F DE+F++KH   G LSMANAG NTNGSQFFI T +TP L+  H VFG V++G D+V+K+E+ ET R+D PK  C I + G+L
Sbjct:   19 PLGRVVFELYNDIVPKTAENFRALCT-GEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 6.271e-41
Identity = 85/137 (62.04%), Postives = 96/137 (70.07%), Query Frame = 1
Query:   22 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 411
            AGR+VM LF DV P+TA NFRALCT GE G G       YKG +FHRII  FM Q             SIYGS FEDE+F LKH GPG+LSMAN+GPNTNGSQFFICT KT WLD +HVVFG V+DG +VV+ +E V
Sbjct:   17 AGRVVMELFADVTPRTANNFRALCT-GENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDV 152          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 8.190e-41
Identity = 95/164 (57.93%), Postives = 106/164 (64.63%), Query Frame = 1
Query:    4 DIAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            DI G+  GRIV+ LF D+VPKTAENFRALCT GEKG G        +KGC FHRIIK FMIQ             SIYG  FEDE+F  KH   G+LSMANAG NTNGSQFFI TV TP LD +HVVFG VI G+ V R LE+VE  + + P   C I   GEL
Sbjct:   23 DIGGERVGRIVLELFADIVPKTAENFRALCT-GEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEV-KGEKPAKLCVIAECGEL 184          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.070e-40
Identity = 96/162 (59.26%), Postives = 106/162 (65.43%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            I  KP GRIV  LF D+VPKTAENFRALCT GEKG G       Y+G  FHRIIK+FMIQ             SIYG  FEDE+FVLKH  P +LSMANAGP TNGSQFFI TV TP LD +HVVFG V+ G  VVR LE++ET  +D P     I   GEL
Sbjct:   12 IGNKPEGRIVFELFKDIVPKTAENFRALCT-GEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETV-SDRPVEDAVIAKCGEL 171          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.112e-40
Identity = 84/135 (62.22%), Postives = 95/135 (70.37%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 411
            I GKPAGRI   LF DVVPKTA+NFRALCT GE+G+GYKG  FHR+I  FM+Q             SIYG  F DE+F LKH  PG+LSMANAGPNTNGSQFFI TV   WLD  HVVFG V   M++V K+ES+
Sbjct:    9 IDGKPAGRIEFQLFEDVVPKTAKNFRALCT-GEQGFGYKGSKFHRVIPQFMLQGGDFTRGDGTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESL 142          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 83/159 (52.20%), Postives = 101/159 (63.52%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEK----GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 471
            I   PAGRI M LF D+ PKTAENFR LCT   +      GYK  +FHR+I  FM+Q             SIYG+ FEDE+F +KH GPG+LSMAN+GPNTNG QFFI T    +LD +H VFG VIDG+  VRK+E+V T   + PK+  RI   GE+
Sbjct:   21 IGDTPAGRIKMELFDDITPKTAENFRQLCTGEHRINSVPQGYKKATFHRVIPQFMVQGGDFVRGDGTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENVPTGANNRPKLQVRIAECGEM 179          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 90/164 (54.88%), Postives = 107/164 (65.24%), Query Frame = 1
Query:    7 IAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV--ETSRTDYPKVPCRIINSGEL 471
            I G  AG++VM L+ + VPKTAENFRALCT GEKG G       YKG SFHR+I +FM Q             SIYG+ F DE+F LKH G G LSMANAG NTNGSQFFIC   T WLD +HVVFG V +GMDVV+K+E+   ++ +T  P V   I N G+L
Sbjct:   20 IGGVEAGKVVMELYANTVPKTAENFRALCT-GEKGIGKSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVV---IANCGQL 179          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 92/164 (56.10%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 480
            GKP GR+V  L+ DVVPKTAENFRALCT GEKG          YKG  FHRIIKDFM Q             SIYG  FEDE+F L H  P +LSMANAG NTNGSQFFI TV TP L+ +HVVFG VI G  +VR+LE  +    D P     I + GELP D
Sbjct:   18 GKPKGRVVFELYNDVVPKTAENFRALCT-GEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLERCDKGENDKPVEDWIISDCGELPSD 180          
The following BLAST results are available for this feature:
BLAST of CX290065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
PPIA_HEMPU2.815e-4162.88Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPID_BOVIN4.801e-4157.9340 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPID_DICDI6.271e-4155.06Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
CP19C_ARATH6.271e-4162.04Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPID_HUMAN8.190e-4157.9340 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPID_RHIOR1.070e-4059.26Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIA2_RHIOR3.112e-4062.22Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
PPIH_CRYNE4.065e-4052.20Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPIA_DICDI4.065e-4054.88Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPID_DEBHA5.308e-4056.10Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020B04SK IF1 Citrus clementina cDNA clone C02020B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290065 ID=CX290065; Name=CX290065; organism=Citrus clementina; type=EST; length=722bp
GGAGATATTGCAGGTAAACCTGCAGGTAGAATAGTAATGGGCCTTTTTGG
AGATGTTGTTCCGAAAACAGCTGAGAACTTTCGTGCACTGTGTACAGCAG
GTGAGAAAGGATATGGTTACAAAGGATGCTCCTTCCACCGTATTATTAAA
GATTTTATGATCCAGGGAGGGGACTTCACTGAGGGAGATGGAACTGGAGG
CATCAGTATTTATGGTTCCAGCTTTGAAGATGAGAGCTTTGTCTTGAAGC
ATGTTGGACCTGGAGTATTAAGCATGGCCAATGCAGGTCCTAATACCAAT
GGGAGCCAATTTTTCATTTGCACAGTGAAGACACCATGGTTGGACAACCG
CCATGTTGTGTTTGGACATGTCATTGATGGAATGGACGTTGTGAGGAAAC
TTGAATCTGTAGAGACAAGCAGGACAGATTACCCAAAGGTGCCATGTAGA
ATTATCAATAGTGGAGAACTACCATTAGATGCCTGATCTGCCAGCTCTGA
TATCTTACCACAACCATAAAATACGACTTTTGTAATTCATCACTTTTGTG
GAGCCAAATGGTTTTTGTAACTGTTATCTACATGAAAGCATGTTCCGCTT
AGTTGAATTAGCTGAGAAACTCAAGAATAATACTCGGTAAGCTCATGGTA
GAGCTGAATATGTACTATTGTTCGGTTGAATGTATATGTGCAGATTCCAC
TTGTAGTAAACAGTCAATAATA
back to top