CX290074

Overview
NameCX290074
Unique NameCX290074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290074 vs. ExPASy Swiss-Prot
Match: CBP3_ORYSJ (Serine carboxypeptidase 3 OS=Oryza sativa subsp. japonica GN=CBP3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 3
Query:   63 PIILWLQGGPGASGVGIGNFEEVGPL----DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTTLLMELFNKNEILQKSPLFIVAESYGGKF 374
            P+++WL GGPG S   +  F E GP     +  L      W   ++++FVD P GTG+SY  D+     ++   +NDL + L   F K+    K+  FI  ESY G +
Sbjct:  115 PVVIWLTGGPGCSSE-LAVFYENGPFTISNNMSLAWNKFGWDTISNIIFVDQPTGTGFSYSSDDRDTRHDETGVSNDLYSFLQVFFKKHPEFAKNDFFITGESYAGHY 221          
BLAST of CX290074 vs. ExPASy Swiss-Prot
Match: SCP2_ARATH (Serine carboxypeptidase-like 2 OS=Arabidopsis thaliana GN=SCPL2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 39/119 (32.77%), Postives = 55/119 (46.22%), Query Frame = 3
Query:   42 ENPSKPWPIILWLQGGPGASGVGIGNFEEVGPLDTYLKPRNST----------WLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTTLLMELFNKNEILQKSPLFIVAESYGG 368
            E   K  P+ILWL GGPG S +  G   E GPL   L   N T          W K + ++F+D PVGTG+SY         +D   A  +   L +   K++    +P ++  +SY G
Sbjct:   70 ERNPKEDPLILWLTGGPGCSSIS-GLLFENGPLTMKLDVYNGTLPSLVSTTYSWTKTSSMIFLDQPVGTGFSYSRTQQFNKPSDSGEAKRIHEFLQKWLGKHQEFSSNPFYVAGDSYSG 187          
BLAST of CX290074 vs. ExPASy Swiss-Prot
Match: CBPY_CANAL (Carboxypeptidase Y OS=Candida albicans GN=CPY1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 42/118 (35.59%), Postives = 56/118 (47.46%), Query Frame = 3
Query:   33 YRIENPSKPWPIILWLQGGPGASGVGIGNFEEVGP--LDTYLKP--RNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTTLLMELFNKNEILQKSPLFIVAESYGGKF 374
            +   N  K  P+ILWL GGPG S +  G F E+GP  +D  LKP     +W   A ++F+D P+  GYSY   +S  V N + A  D+   L   F            I  ESY G +
Sbjct:  161 FESRNDPKNDPVILWLNGGPGCSSL-TGLFFELGPSSIDKNLKPVYNPHSWNANASVIFLDQPINVGYSY---SSQSVSNTIAAGKDVYAFLQLFFKNFPEYANLDFHIAGESYAGHY 274          
BLAST of CX290074 vs. ExPASy Swiss-Prot
Match: NF314_NAEFO (Virulence-related protein Nf314 OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 40/130 (30.77%), Postives = 67/130 (51.54%), Query Frame = 3
Query:   12 WWLYKSPYRIENPSKPWPIILWLQGGPGASGVGIGNFEEVGPL----DTYLKPRNS-TWLKKADLLFVDNPVGTGYSYVEDNSSFVK-NDVEAANDLTTLLMELFNKNEILQKSPLFIVAESYGGKFAAT 383
            +W ++S   + NPS+  P+++W  GGPG S +G G   E G      D     RN  +W + +++L+++ PVG G+SY      +   NDV+AA+D+   L +   +         ++  ESYGG +  T
Sbjct:   47 YWFFES---MRNPSQD-PLVMWTNGGPGCSSLG-GEASEHGLFLVNADGATITRNPYSWNRVSNILYIEQPVGVGFSYSNSTDDYQNLNDVQAASDMNNALRDFLTRFPQFIGRETYLAGESYGGVYVPT 171          
BLAST of CX290074 vs. ExPASy Swiss-Prot
Match: HNLS_SORBI (P-(S)-hydroxymandelonitrile lyase OS=Sorghum bicolor PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 34/104 (32.69%), Postives = 52/104 (50.00%), Query Frame = 3
Query:   63 PIILWLQGGPGASGVGIGNFEEVGPLDTY-----LKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTTLLMELFNKNEILQKSPLFIVAES 359
            P++LWL GGPG S +G+G  +E+GP   +     L      W K A++LF ++P G  +SY   +S     D + A D  T L++ F +         +I  ES
Sbjct:  110 PLVLWLNGGPGCSSIGLGAMQELGPFRVHTNGESLLLNEYAWNKAANILFAESPAGVVFSYSNTSSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES 213          
The following BLAST results are available for this feature:
BLAST of CX290074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CBP3_ORYSJ4.090e-1134.26Serine carboxypeptidase 3 OS=Oryza sativa subsp. j... [more]
SCP2_ARATH6.977e-1132.77Serine carboxypeptidase-like 2 OS=Arabidopsis thal... [more]
CBPY_CANAL6.977e-1135.59Carboxypeptidase Y OS=Candida albicans GN=CPY1 PE=... [more]
NF314_NAEFO9.112e-1130.77Virulence-related protein Nf314 OS=Naegleria fowle... [more]
HNLS_SORBI9.112e-1132.69P-(S)-hydroxymandelonitrile lyase OS=Sorghum bicol... [more]

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Properties
Property NameValue
Genbank descriptionC02020C01SK IF1 Citrus clementina cDNA clone C02020C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290074 ID=CX290074; Name=CX290074; organism=Citrus clementina; type=EST; length=735bp
ACACATGTCTTTGGTGGCTATATAAGAGTCCATACAGAATTGAAAATCCC
TCAAAGCCGTGGCCTATCATTCTTTGGTTGCAAGGCGGCCCTGGTGCTTC
AGGAGTTGGGATTGGGAATTTTGAAGAGGTTGGGCCATTAGACACTTATT
TGAAGCCAAGGAATTCAACATGGTTGAAGAAAGCTGACCTATTATTTGTT
GACAATCCTGTGGGAACAGGATACAGCTATGTTGAGGATAATAGCTCGTT
TGTGAAAAACGATGTTGAGGCAGCAAATGATTTAACTACATTGCTAATGG
AGTTATTTAACAAGAATGAAATTCTGCAAAAGAGTCCTCTGTTTATTGTG
GCAGAGTCTTATGGAGGCAAATTTGCTGCAACTCTCGGACTGGCAGCCGT
TAAAGCCATTGAAGCTGGAAAGTTAAAGCTCAAACTTGGAGGAGTTGCCT
TGGGAGATAGTTGGATCTCACCAGAGGATTTTGTGTTTTCATGGGGGCCT
CTACTTAAAGATATGTCAAGGCTTGATACCAATGGCTTCGCAAAATCAAA
TCAAATAGCTCAAAAGATTAAGCAGCAGCTTGAAGCTGGTGAATTTGTTA
GTGCCACAGACTCATGGGCGCAACTTGAGAGTGTGATTAGTCAAAACAGC
AACTCTGTGGATTTTTACAATTTTCTACTGGATTCGGGCATGGACCCTGT
GTCTTTACAGCATCACATTAGCAGTAGGAGCTTCA
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