CX290077

Overview
NameCX290077
Unique NameCX290077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290077_ssr142 microsatellite CX290077_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig279 contig Ccv1_Contig279:13..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: PP2C3_PARTE (Probable protein phosphatase 2C 3 OS=Paramecium tetraurelia GN=GSPATT00031056001 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 38/104 (36.54%), Postives = 65/104 (62.50%), Query Frame = 2
Query:   53 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLH----SESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 352
            GD+E+K +  L   +Q++ A PD+   EL   D F+++ CDG+++ ++ Q+L+  ++  L     +E+ +S   E +L++ LAP T+ G GCDNMT I+V  KK
Sbjct:  197 GDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQELLKHVNTTLGNSPVTENLLSKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLKK 300          
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: P2C17_ORYSJ (Probable protein phosphatase 2C 17 OS=Oryza sativa subsp. japonica GN=Os02g0599150 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   53 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE-SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 349
            GD  FK+NK L  EKQ++  +PDI + ++ DD +F+V+A  G+W C+ S  +V +IH++L  E +++  +CE V+E  LA         +N T+I+VQFK
Sbjct:  252 GDFAFKKNKDLDREKQMLVCDPDILADDITDDMEFLVIASQGLWSCVDSADVVSYIHDRLSVEGAELRVICEEVVEFGLASG-------ENTTVILVQFK 344          
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: P2C16_ORYSJ (Probable protein phosphatase 2C 16 OS=Oryza sativa subsp. japonica GN=Os02g0598400 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   53 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE-SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 349
            GD  FK+NK L  EKQ++  +PDI + ++ DD +F+V+A  G+W C+ S  +V +IH++L  E +++  +CE V+E  LA         +N T+I+VQFK
Sbjct:  236 GDFAFKKNKDLDREKQMLVCDPDILADDITDDMEFLVIASQGLWSCVDSADVVSYIHDRLSVEGAELRVICEEVVEFGLASG-------ENTTVILVQFK 328          
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: PP2C2_PARTE (Probable protein phosphatase 2C 2 OS=Paramecium tetraurelia GN=GSPATT00030171001 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.708e-14
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 2
Query:   53 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLH----SESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 352
            GD+E+K++  L   +Q++ A PD+  VEL   D F++L CDG+++ ++   L+  ++  L     +E  +    E +L++ LAP T+ G GCDNMT I+V  KK
Sbjct:  197 GDLEYKRDSKLRVNEQLIIAIPDVKKVELGPQDKFLLLGCDGVFETLNHMDLLKQVNSTLGQAQVTEELLRKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLKK 300          
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: PP2C1_PARTE (Protein phosphatase 2C 1 OS=Paramecium tetraurelia GN=GSPATT00029903001 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.230e-14
Identity = 34/104 (32.69%), Postives = 65/104 (62.50%), Query Frame = 2
Query:   53 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLH----SESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 352
            GD+E+K++  L + +Q++ A PD+   EL   D F+++ CDG+++ ++ Q+L+  ++  +     +E  +    E +L++ LAP T+ G GCDNMT I+V  ++
Sbjct:  197 GDLEYKRDNKLRSNEQLIIALPDVKKTELTPQDKFILMGCDGVFETLNHQELLKQVNSTIGQAQVTEELLKKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLRR 300          
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: P2C18_ORYSJ (Probable protein phosphatase 2C 18 OS=Oryza sativa subsp. japonica GN=Os02g0599200 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.474e-14
Identity = 37/99 (37.37%), Postives = 62/99 (62.63%), Query Frame = 2
Query:   53 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 349
            GD  FKQNK L+ E+Q++  +PDI++ ++  D +F+V+A  G+W CM S  +V +IH +L    ++  +CE +++  LA         +N T+I+VQFK
Sbjct:  344 GDFAFKQNKDLNREEQMLICDPDIHTHDITGDMEFLVIASQGLWSCMESADVVAYIHVRLLEGVELRVICEELVQSGLASG-------ENTTVILVQFK 435          
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: P2C21_ORYSJ (Probable protein phosphatase 2C 21 OS=Oryza sativa subsp. japonica GN=Os02g0606900 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.174e-13
Identity = 36/100 (36.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   53 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLH-SESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 349
            GD  +KQN+ +   +Q+VT  PDI    + DD +F+V+A DG+WD M +  +V F+ ++L   E  +   CE+++  CL  +       DN T I+V+FK
Sbjct:  214 GDFAYKQNRNMPPSQQMVTCVPDIRVENITDDTEFLVIASDGVWDGMRNNNVVQFVRQELRPGEENLRETCEKLVGHCLHSN-------DNATAILVKFK 306          
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 37/111 (33.33%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   17 LNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 346
            +N S++V S   GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  187 VNGSLAV-SRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 37/111 (33.33%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   17 LNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 346
            +N S++V S   GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  187 VNGSLAV-SRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
BLAST of CX290077 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 37/111 (33.33%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   17 LNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 346
            +N S++V S   GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  187 VNGSLAV-SRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
The following BLAST results are available for this feature:
BLAST of CX290077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PP2C3_PARTE1.183e-1536.54Probable protein phosphatase 2C 3 OS=Paramecium te... [more]
P2C17_ORYSJ1.307e-1440.00Probable protein phosphatase 2C 17 OS=Oryza sativa... [more]
P2C16_ORYSJ1.307e-1440.00Probable protein phosphatase 2C 16 OS=Oryza sativa... [more]
PP2C2_PARTE1.708e-1436.54Probable protein phosphatase 2C 2 OS=Paramecium te... [more]
PP2C1_PARTE2.230e-1432.69Protein phosphatase 2C 1 OS=Paramecium tetraurelia... [more]
P2C18_ORYSJ8.474e-1437.37Probable protein phosphatase 2C 18 OS=Oryza sativa... [more]
P2C21_ORYSJ7.174e-1336.00Probable protein phosphatase 2C 21 OS=Oryza sativa... [more]
PPM1A_RAT9.370e-1333.33Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_RABIT9.370e-1333.33Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]
PPM1A_MOUSE9.370e-1333.33Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]

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Properties
Property NameValue
Genbank descriptionC02020C04SK IF1 Citrus clementina cDNA clone C02020C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290077 ID=CX290077; Name=CX290077; organism=Citrus clementina; type=EST; length=624bp
AGGTACATTTTCTTGTTTAAATGCTTCAGTTTCAGTGTTCTCTTAATTTG
CAGGTGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAA
ATTGTTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGA
TGATTTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCC
AGCAATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATT
TCTGCTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGC
AGGAGGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGA
AACCAATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTC
AAATCAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAGCC
GCTGTAATGTACCACTATGTCAGGCTGCACGATTCTGGTTCCTTTGCCCA
TAAGACAATGCAAGAATCCCTTTCGTTGAAAAATTGGGATCAAAGACGTG
TGTACTTGTAGATGGTCCAGCACTGAGAAAAAAGAAAAAAATAAATGAAA
TGTTTACAAAAAAAAAAAAAAAAA
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