CX290108

Overview
NameCX290108
Unique NameCX290108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_AZOSB (30S ribosomal protein S5 OS=Azoarcus sp. (strain BH72) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 45/134 (33.58%), Postives = 67/134 (50.00%), Query Frame = 1
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLL 423
            V K  + G+   F A  VVGD DG +G+G   S+EV  A++ A+  A+  ++ V          +  T+   V GK G+ +V M PAP G GI+A    + V +  G+ D+     GST    N V+AT   L+
Sbjct:   29 VTKVVKGGRILGFAALTVVGDGDGGIGMGKGKSREVPVAVQKAMDEARRKMVKVSL--------KDGTLQHTVVGKHGAASVLMQPAPGGTGIIAGGPMRAVFEVMGVTDIICKCIGSTNPY-NVVRATLNGLM 153          
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_AZOC5 (30S ribosomal protein S5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 50/135 (37.04%), Postives = 68/135 (50.37%), Query Frame = 1
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R  F A V+VGD  G VG G   ++EV  AIR A   AK ++I  P+R G          T+   V G  G+  V +  AP G GI+A    + V +  G+ DV   S GS+    N V+ATF+ L
Sbjct:   28 VAKVVKGGRRFGFAALVIVGDQKGRVGFGHGKAREVPEAIRKATESAKRALIRVPLREG---------RTLHHDVHGHHGAGKVILRAAPAGTGIIAGGPMRAVFETLGVHDVVAKSFGSSNPY-NMVRATFDAL 152          
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_ANADF (30S ribosomal protein S5 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKAT 408
            V K  + G+R  F A VVVGD +G+VG+G+  + EV  AIR     AK ++  V        +G   T+P +V G  G+  V + PA  G G++A    + VL+ AGI +V T  +GS +   N +KAT
Sbjct:   22 VAKVVKGGRRFSFSALVVVGDGNGYVGVGLGKANEVPEAIRKGGDQAKKNLFKV------PLVGT--TIPHEVLGHFGAGWVLLKPAGEGTGVIAGGTVRAVLEAAGIRNVLTKCQGS-RNPHNVLKAT 141          
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RR5_CYAPA (30S ribosomal protein S5, cyanelle OS=Cyanophora paradoxa GN=rps5 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 42/145 (28.97%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL--LKTYGFLTPD 450
            V K  + G++  F+A VV+G+  G VG+G+  + +V  A++ A    K  V+ V        + R +++P  + G  G+  V M P+  G G++A    + VL+ AG+ ++     GS   L N  +A    L  LKT+     D
Sbjct:   27 VSKVVKGGKKLSFRAIVVIGNERGQVGVGIGKASDVINAVKKAAADGKKHVVEV-------PLTRSNSIPHPIDGIGGAARVIMRPSAEGTGVIAGGAVRTVLELAGVRNILAKQLGSNNPLNN-ARAAMNALSRLKTFSQFAKD 163          
The following BLAST results are available for this feature:
BLAST of CX290108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 404
Match NameE-valueIdentityDescription
RS5_AZOSB8.621e-1133.5830S ribosomal protein S5 OS=Azoarcus sp. (strain B... [more]
RS5_AZOC58.621e-1137.0430S ribosomal protein S5 OS=Azorhizobium caulinoda... [more]
RS5_ANADF8.621e-1137.2130S ribosomal protein S5 OS=Anaeromyxobacter sp. (... [more]
RR5_CYAPA8.621e-1128.9730S ribosomal protein S5, cyanelle OS=Cyanophora p... [more]

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Properties
Property NameValue
Genbank descriptionC02020E11SK IF1 Citrus clementina cDNA clone C02020E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290108 ID=CX290108; Name=CX290108; organism=Citrus clementina; type=EST; length=713bp
AATTCGGCACTAGGCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAG
GACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGG
GTCTTGGCGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCT
ATCATATTGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGG
TAACAAGATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAAGT
GTGGCAGTGTCACCGTGAGGATGGTTCCGGCCCCACGTGGTGCCGGAATT
GTGGCGGCTAGGGTTCCAAAGAAGGTGCTGCAGTTTGCTGGTATTGACGA
TGTTTTCACATCTTCTCGTGGGTCGACCAAGACTCTTGGAAACTTTGTCA
AGGCAACCTTTGAGTGTTTGTTGAAGACATATGGCTTCCTTACACCTGAT
TTCTGGAGGGAGACTCGTTTTGTGAAATCTCCATACCAAGAGTACACAGA
TCTTTTGACGCCAAAGCCCATCAACAAGGCAGTCATCACAGAAGTTGATC
AAGCTGAACCTTAAGCTACTTAAGGCTGCATGGAGAGGAGAGCATTAGAA
TGAAAGGCATTTTGGTTGACTTTATAGTATAGCTTTGTTTGTTACAGACT
TTTCTGTTTTTCATTTCTGCAGGACTAGTATGTTGCTATTTGGGGACACA
ATTGTTTGCTTTA
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