CX290108

Overview
NameCX290108
Unique NameCX290108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAAN (30S ribosomal protein S5 OS=Staphylococcus aureus (strain N315) GN=rpsE PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAAM (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsE PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAAE (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Newman) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAAC (30S ribosomal protein S5 OS=Staphylococcus aureus (strain COL) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAAB (30S ribosomal protein S5 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAA9 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain JH9) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAA8 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAA3 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain USA300) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAA2 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain JH1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS5_STAA1 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   22 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 420
            V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   21 VAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144
The following BLAST results are available for this feature:
BLAST of CX290108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 404
Match NameE-valueIdentityDescription
RS5_STAAN4.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAM4.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAE4.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAC4.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAB4.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA94.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA84.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA34.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA24.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA14.418e-1539.1030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionC02020E11SK IF1 Citrus clementina cDNA clone C02020E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290108 ID=CX290108; Name=CX290108; organism=Citrus clementina; type=EST; length=713bp
AATTCGGCACTAGGCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAG
GACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGG
GTCTTGGCGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCT
ATCATATTGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGG
TAACAAGATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAAGT
GTGGCAGTGTCACCGTGAGGATGGTTCCGGCCCCACGTGGTGCCGGAATT
GTGGCGGCTAGGGTTCCAAAGAAGGTGCTGCAGTTTGCTGGTATTGACGA
TGTTTTCACATCTTCTCGTGGGTCGACCAAGACTCTTGGAAACTTTGTCA
AGGCAACCTTTGAGTGTTTGTTGAAGACATATGGCTTCCTTACACCTGAT
TTCTGGAGGGAGACTCGTTTTGTGAAATCTCCATACCAAGAGTACACAGA
TCTTTTGACGCCAAAGCCCATCAACAAGGCAGTCATCACAGAAGTTGATC
AAGCTGAACCTTAAGCTACTTAAGGCTGCATGGAGAGGAGAGCATTAGAA
TGAAAGGCATTTTGGTTGACTTTATAGTATAGCTTTGTTTGTTACAGACT
TTTCTGTTTTTCATTTCTGCAGGACTAGTATGTTGCTATTTGGGGACACA
ATTGTTTGCTTTA
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