CX290117

Overview
NameCX290117
Unique NameCX290117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290117 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 52/190 (27.37%), Postives = 89/190 (46.84%), Query Frame = 1
Query:  202 NLTKREKVALHDCLETIDETLDELHKAVEDLEEY---------PNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLTEETSTVDGWPAWLSPGDRRLLQS---SSVTPNAVVAADGSENFKTVGRSVAAAPQGGTKRYIIRI 735
            ++  RE+VA+ DC E +  ++ EL  ++ ++ +                +    +LKT +SAAM+NQ TCL+GF  +   +   + +      V ++ SN L M    T  + +  + S N  +          P WL+  D  L+     S + PN VVA DG   ++T+  ++  AP   TKRY+I +
Sbjct:   96 SIRSREQVAIEDCKELVGFSVTELAWSMLEMNKLHGGGGIDLDDGSHDAAAAGGNLKTWLSAAMSNQDTCLEGF--EGTERKYEELIKGSLRQVTQLVSNVLDMY---TQLNALPFKASRNESVIAS-------PEWLTETDESLMMRHDPSVMHPNTVVAIDGKGKYRTINEAINEAPNHSTKRYVIYV 273          
BLAST of CX290117 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 51/168 (30.36%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  229 LHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLTEETSTVDGWPAWLSPGDRRLLQSS--SVTPNAVVAADGSENFKTVGRSVAAAPQGGTKRYI 726
            ++DCLE +D+TLD L++ V         K      DD+ T +SAA+TNQ TC    S   +      A+     ++  + +N+L M  +           +  RKL  +      +P W+S  DR+LL++S   + P+AVVAADGS    +V  ++A+  +G  +  I
Sbjct:  102 VNDCLELLDDTLDMLYRIVVI-------KRKDHVNDDVHTWLSAALTNQETCKQSLSEKSSFNKEGIAIDSFARNLTGLLTNSLDMFVSDKQKSSSSSNLTGGRKLLSD----HDFPTWVSSSDRKLLEASVEELRPHAVVAADGSGTHMSVAEALASLEKGSGRSVI 258          
BLAST of CX290117 vs. ExPASy Swiss-Prot
Match: PME46_ARATH (Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 66/254 (25.98%), Postives = 118/254 (46.46%), Query Frame = 1
Query:    4 EPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQV-HVEKMCSNALAMIK---NMTDT----DMMIMRTSNNRKLTEETSTVDGWPAWLSPGDRRLLQSSSVTPNA--VVAADGSENFKTVGRSVAAAPQGGTKRYIIRI 735
            EP    +K+ C  T + + CF  + + P AS+  +S +++ + ++ +T T +     G        N T     A+  C+E I   +D+L++ +          S  ++ DDL+T +S+  T Q TC+D     +ANK       +  + +  +M SNALA+I     + DT       ++ T N + +  +   ++G         RRLL+S  +   A  VVA DGS  ++T+G ++A   +   K  II +
Sbjct:   62 EPISVSVKALCDVTLHKEKCFETLGSAPNASR--SSPEELFKYAVKVTITELSKVLDGFSNGEHMDNAT---SAAMGACVELIGLAVDQLNETM---------TSSLKNFDDLRTWLSSVGTYQETCMDALV--EANKPSLTTFGENHLKNSTEMTSNALAIITWLGKIADTVKFRRRRLLETGNAKVVVADLPMMEG---------RRLLESGDLKKKATIVVAKDGSGKYRTIGEALAEVEEKNEKPTIIYV 290          
BLAST of CX290117 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 67/246 (27.24%), Postives = 114/246 (46.34%), Query Frame = 1
Query:   28 SSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVI---EMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVH--VEKMCSNALAMIKNMTDTDMMIMR--TSNNRKLTEETSTVDG-------------WPAWLSPGDRRLLQSSSVTPNA--VVAADGSENFKTVGRSVAAA 699
            +SC  T YP +C   ++  P   K +  Q D     ++ ++ T       +  +  L +  +L K    AL DCLE  ++T+D+L+ +     +Y      S H  D +T +SAA+ NQ TC +GF  D             Q H  + K  SN+LA+ K   + + +  +  ++   K +++ S+  G             +P+W    DR+LL+ S  T  A  VVA DGS ++ ++ ++V AA
Sbjct:   36 TSCKQTPYPSVCDHHMSNSP--LKTLDDQTDGFTFHDLVVSSTMDQAVQLHRLVSSLKQHHSLHKHATSALFDCLELYEDTIDQLNHSRRSYGQYS-----SPH--DRQTSLSAAIANQDTCRNGF-RDFKLTSSYSKYFPVQFHRNLTKSISNSLAVTKAAAEAEAVAEKYPSTGFTKFSKQRSSAGGGSHRRLLLFSDEKFPSWFPLSDRKLLEDSKTTAKADLVVAKDGSGHYTSIQQAVNAA 271          
BLAST of CX290117 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 64/253 (25.30%), Postives = 120/253 (47.43%), Query Frame = 1
Query:   22 LKSSCSSTRYPDLCFSAI-AAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLK-RTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLT--------EETSTVDGWPAWLSPGDRRLLQSSSVTP-----NAVVAADGSENFKTVGRSVAAAPQGGTKRYIIRI 735
            +++ C+ T + D C +++  A P++   V    D+I++   +T  ++  +       +K + +     K A   C + + + +D+L K    ++   +   +    +DL+  +S ++  Q TC+D F    +N  ++D L   +   E + SN+LAM+  ++     ++  SN   LT        +  ST D  P W+ P  RRL+ +    P     NAVVA DG+  FKT+  ++ A P+G    +II I
Sbjct:   51 VQAVCAPTDFKDTCVNSLMGASPDSDDPV----DLIKLGFKVTIKSINESLEKASGDIKAKADKNPEAKGAFELCEKLMIDAIDDLKKC---MDHGFSVDQIEVFVEDLRVWLSGSIAFQQTCMDSFGEIKSNL-MQDMLKIFKTSRE-LSSNSLAMVTRIST----LIPNSNLTGLTGALAKYARKLLSTEDSIPTWVGPEARRLMAAQGGGPGPVKANAVVAQDGTGQFKTITDALNAVPKGNKVPFIIHI 290          
BLAST of CX290117 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 50/186 (26.88%), Postives = 90/186 (48.39%), Query Frame = 1
Query:  211 KREKVALHDCLETIDETLDELHKAVEDLEEYPNK-KSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIM--------RTSNNRKL--TEETSTVDGWPAWLSPGDRRLLQSSSVTPNAVVAADGSENFKTVGRSVAAAPQGGTKRYIIRI 735
            +R + A+ DCL+ +D + +EL  +    E    K         D +T +SAA++NQ TC++GF  D  +  V+  ++     +  M    L +++       +          +    RKL  T+E  ++  +P W+ P DR+LL+S+  T +  VA DG+ NF  +  ++  AP   + R++I I
Sbjct:   63 RRLQNAVSDCLDLLDFSSEELTWSASASENPKGKGNGTGDVGSDTRTWLSAALSNQATCMEGF--DGTSGLVKSLVAGSLDQLYSMLRELLPLVQPEQKPKAVSKPGPIAKGPKAPPGRKLRDTDEDESLQ-FPDWVRPDDRKLLESNGRTYDVSVALDGTGNFTKIMDAIKKAPDYSSTRFVIYI 245          
The following BLAST results are available for this feature:
BLAST of CX290117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PME22_ARATH1.513e-1327.37Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME35_ARATH7.511e-1330.36Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME46_ARATH9.810e-1325.98Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME6_ARATH2.185e-1227.24Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME23_ARATH2.185e-1225.30Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME44_ARATH9.182e-1126.88Probable pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionC02020F08SK IF1 Citrus clementina cDNA clone C02020F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290117 ID=CX290117; Name=CX290117; organism=Citrus clementina; type=EST; length=737bp
AACGAGCCTCATCATGCTATCCTCAAATCATCATGCAGCAGCACAAGGTA
CCCGGACTTATGCTTTTCGGCTATTGCTGCCGTTCCAGAGGCCTCCAAAA
AGGTGACAAGCCAAAAGGACGTTATTGAGATGTCCTTAAATATCACAACA
ACAGCCGTGGAACACAACTACTTCGGGATTCAGAAGCTCTTGAAGAGAAC
GAATCTCACCAAACGGGAAAAGGTTGCTCTCCATGACTGTCTTGAGACGA
TCGATGAGACTCTTGATGAGTTACACAAAGCCGTCGAGGATCTTGAGGAG
TACCCGAACAAGAAATCTTTATCACAGCATGCGGATGATCTCAAAACCTT
AATGAGTGCCGCGATGACCAATCAGGGGACGTGTCTTGATGGGTTCTCGC
ATGATGATGCTAATAAGCACGTGCGGGATGCGTTGTCAGACGGCCAGGTT
CATGTTGAGAAGATGTGTAGCAATGCGCTTGCTATGATCAAGAACATGAC
GGACACTGACATGATGATCATGAGGACTTCAAACAACAGGAAGCTGACAG
AGGAGACCAGTACGGTTGATGGGTGGCCGGCGTGGCTGTCCCCCGGCGAC
AGGAGGCTGTTGCAGTCCTCGTCGGTGACACCGAACGCGGTGGTGGCGGC
AGATGGCAGCGAAAACTTTAAGACGGTGGGGCGCAGCGTGGCGGCGGCTC
CTCAGGGAGGCACTAAGCGGTATATTATTAGGATTAA
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