CX290118

Overview
NameCX290118
Unique NameCX290118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290118 vs. ExPASy Swiss-Prot
Match: AQY1_YEAST (Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 49/138 (35.51%), Postives = 65/138 (47.10%), Query Frame = 2
Query:  287 DGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGI 700
            DG     ++ IA  FG  +   ++C AG+SGG +NPAV+  L LAR VS  R V+  V+Q +  ++  G   A            AN L  G S   GL  E+ GT +L  TV      KR         +A LPIGI
Sbjct:   84 DGSHPGQLIMIAIGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAVSPTRCVVMWVSQIVAGMAAGGAASAMTPGEVL----FANSLGLGCSRTRGLFLEMFGTAILCLTVLMTAVEKRETN-----FMAALPIGI 212          
BLAST of CX290118 vs. ExPASy Swiss-Prot
Match: AQPZ_SHEON (Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 41/141 (29.08%), Postives = 70/141 (49.65%), Query Frame = 2
Query:  299 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG---LVKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGI 700
            G+G+LG++ AFG  +  + +    ISG H+NPAV+FGL+   +      + Y++AQ  G I+G G   L+ + Q+ +    G  +N   +    GYS    +  EI+ T   +  +  +TD +           AP+ IG+
Sbjct:   33 GIGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVSFGLWAGGRFPTSELLPYIIAQVAGGIAGAGVLYLIASGQEGFSLAAGFASNGFGEHSPGGYSMISVMICEIVMTLFFLLVILGSTDERAPKG------FAPIAIGL 167          
BLAST of CX290118 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 2
Query:  260 SQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIG 697
            + T  A    G AG      A A    + V V  TAG  +SGGH+NPAVT  L +   ++L R+ +Y+ AQ  G+     L++          GG A   + LADG     G+AAE + TF L+  + +   DP+R+A     P+L  L +G
Sbjct:   42 ASTITAGKAAGGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLT-------GGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVG 186          
The following BLAST results are available for this feature:
BLAST of CX290118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
AQY1_YEAST3.791e-1135.51Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE... [more]
AQPZ_SHEON4.952e-1129.08Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 ... [more]
TIP42_ORYSJ6.467e-1133.55Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC02020F09SK IF1 Citrus clementina cDNA clone C02020F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290118 ID=CX290118; Name=CX290118; organism=Citrus clementina; type=EST; length=700bp
AATTGGCACGTGGCTTTGCAGCGCTCTCAGTTTTCTCTGTTTCTCTCCAA
TCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGCAGAGCAC
GGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCGCTATT
CGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGATAGCTG
AGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTGTCATT
GGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGCCGG
CGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTTGTCC
TCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCAGTG
ACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGTGAT
GTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTTGGGTTGGTCA
AGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAACGAG
CTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGCCGAGATCATCGG
CACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACTGATCCCAAGAGAA
GCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCTCCCCATTGGGATT
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