CX290119

Overview
NameCX290119
Unique NameCX290119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 2
Query:   11 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 331
            GYS   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++    A    WLFWV P +GA I A   + +L
Sbjct:  126 GYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTWVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGAIIWKGLL 225          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 2
Query:   14 YSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 328
            YS    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  WLFW+ P  GA + A  ++ +
Sbjct:  132 YSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 2
Query:   14 YSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 328
            YS    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  WLFW+ P  GA + A  ++ +
Sbjct:  132 YSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 2
Query:   11 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 328
            GYS    L  E++ T   +  +  +T        S VPV  AP+ IG  + ++HL +IP+T T +NPARS G A ++  D A    WLFWV P IGA IA    + +
Sbjct:  126 GYSLTAALVTEVVMTAFFLLIILGSTH-------SRVPVGFAPIAIGLGLTLIHLVSIPVTNTSVNPARSTGQA-LFVGDWAISQLWLFWVAPLIGAVIAGIVWKIV 224          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 38/107 (35.51%), Postives = 52/107 (48.60%), Query Frame = 2
Query:   11 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 331
            GY     L  E + TF+ +  +   TD    A        AP  IG A+ ++HL +IPIT T +NPARS G A+           WLFW+ P  GA +A F +  +L
Sbjct:  136 GYGFLAALLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVALFCGNPALIGQLWLFWLAPIAGALLAGFVYHNVL 236          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 331
            L +  + G  +  E+  T  LV  +F++TD +R            L IGF+V + HL  I  TG  +NPARSL  AV+  K   +DD W+FW+GP +GA I +  + ++L
Sbjct:  121 LHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLL 223          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: AQY1_YEAST (Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 2
Query:   11 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 307
            G S   GL  E+ GT +L  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARSLGAAV       +   W++W+GP +G+ +A
Sbjct:  171 GCSRTRGLFLEMFGTAILCLTVLMTAVEKRETN-----FMAALPIGISLFIAHVALTAYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGSILA 262          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 355
            LA G      +  E + TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR  G A++      W   W++W+GPF+GA +A   +++++   A  A+
Sbjct:  139 LASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRG----HVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLGAGLAGLVYEYLVIPSADAAV 250          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 328
            L+ G +    +  EI+ TF LVYTV++ A DPK+      + ++APL IG  V    L      G  +NPA S G AV+      W + W++WVGPFIGAAIAA  +  I
Sbjct:  135 LSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKG----DIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 2
Query:   11 GYSTGVG----LAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 319
            G S G+G    +  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV+          W++WVGP +G A+A   +
Sbjct:  132 GVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---LSQIWIYWVGPLVGGALAGLIY 232          
The following BLAST results are available for this feature:
BLAST of CX290119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
AQPZ_BRUME8.573e-1338.32Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
AQPZ_BORPA8.573e-1336.19Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR8.573e-1336.19Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
AQPZ1_RHIME8.573e-1338.32Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
AQPZ_SYNY31.120e-1235.51Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
AQP2_RAT1.120e-1236.36Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
AQY1_YEAST1.462e-1240.40Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE... [more]
TIP31_MAIZE1.910e-1234.45Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP13_ARATH1.910e-1240.91Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP23_ARATH2.494e-1239.81Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020F10SK IF1 Citrus clementina cDNA clone C02020F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290119 ID=CX290119; Name=CX290119; organism=Citrus clementina; type=EST; length=683bp
GCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGCCGAGATCATCG
GCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTGATCCCAAGAGA
AGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTCCCCATTGGATT
TGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCACTGGCACTGGCA
TTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGACAAG
GCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTCATCGGTGCAGC
AATTGCGGCTTTCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCAAGG
CTCTTGGTTCATTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCGACAA
GTGGATTATCCACATCTTCATGGGGTTAATGATTTAAAATTGGAAAGAAA
AAACTGGGAAGGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAATGAG
GGGGGGTGTGATTTGTGCTTTCAAGGAGTTGTAGGCAAAAAGTCTCTTAG
ACAATGAGGGGGCTTGCTTTTTTGTAATCCCCTCTGTTGTTTTCAAGCAC
TTTCCTTAGAATTCACTTCTTCAATGTTTCTGTCTCTTTCTACTTTGTAT
TATTTTCTCCGTATGTGATTATTATTATTATTG
back to top