CX290125

Overview
NameCX290125
Unique NameCX290125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 6.916e-63
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = -3
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI GDWNGAGAH NYSTKSMR +GG+E+IKKAI+KLGLRH EHIAAYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  233 SFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356          
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.033e-63
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = -3
Query:  271 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 639
            +FDPKPI GDWNGAGAHAN+STKSMR +GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETADIN F WGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  233 SFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.033e-63
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = -3
Query:  271 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 639
            +FDPKPI GDWNGAGAHAN+STKSMR +GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETADIN F WGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  233 SFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 9.033e-63
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = -3
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI GDWNGAGAH NYSTKSMR +GG+E+IKKAIEKLGLRH EHI+AYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LW P
Sbjct:  233 SFDPKPIPGDWNGAGAHTNYSTKSMREEGGYEIIKKAIEKLGLRHKEHISAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP 356          
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.180e-62
Identity = 112/122 (91.80%), Postives = 117/122 (95.90%), Query Frame = -3
Query:  274 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 639
            +FDPKPI GDWNGAGAH NYSTK+MR +GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  233 SFDPKPIPGDWNGAGAHTNYSTKTMREEGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.012e-62
Identity = 112/124 (90.32%), Postives = 116/124 (93.55%), Query Frame = -3
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            + DPKPI GDWNGAGAH NYSTKSMR DGG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETADINTF WGVANRGASIRVGRDTE+ GKGYFEDRRPASNMDPY VTSMIAE+TILWKP
Sbjct:  233 SLDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFLWGVANRGASIRVGRDTEQAGKGYFEDRRPASNMDPYTVTSMIAESTILWKP 356          
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.483e-62
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = -3
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI+GDWNGAGAH NYSTK+MRNDGG+E IK AI+KLG RH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  233 SFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEEIKSAIQKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.647e-62
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = -3
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI+GDWNGAGAH NYSTKSMR DGG+EVI KAIEKLG +H EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRP+SNMDPYVVTSMIA+TTILWKP
Sbjct:  233 SFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP 356          
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.647e-62
Identity = 107/124 (86.29%), Postives = 117/124 (94.35%), Query Frame = -3
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI GDWNGAGAH NYSTKSMRNDGG+E+IK AIEKL LRH EHI+AYGEGNERRLTG+HETADINTF WGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPY+VTSMIAETTI+WKP
Sbjct:  233 SFDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYIVTSMIAETTIIWKP 356          
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.304e-61
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = -3
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI GDWNGAGAH NYSTKSMR DGG+EVIK AI+KLG +H EHIAAYGEGNERRLTG+HETADINTF WGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  232 SFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKAAIDKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 355          
The following BLAST results are available for this feature:
BLAST of CX290125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLN11_ARATH6.916e-6389.52Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA4_PEA9.033e-6391.06Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA3_PEA9.033e-6391.06Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLN12_ARATH9.033e-6389.52Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA_LACSA1.180e-6291.80Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLN14_ARATH2.012e-6290.32Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLNA1_PHAVU4.483e-6288.71Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA1_MEDSA7.647e-6288.71Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLN11_ORYSJ7.647e-6286.29Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA1_SOYBN1.304e-6187.90Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionC02020G04SK IF1 Citrus clementina cDNA clone C02020G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290125 ID=CX290125; Name=CX290125; organism=Citrus clementina; type=EST; length=683bp
GTTTTTTTTTTTTTTTTTTGAACAAAAGGAATTGACCCTTCCATAATGTT
ATTAAATTAAATGTTTACATTATTCAACCCAATAGGACAGCAGGAAGCAA
TGAACCCACTGTTGCAAATACAGGGGCAGAGATTGAAACAAGACAAAAGC
TGAACTACTACTAATAAAGCATCCTTAGCAGAACACAATTCTGTCGTGAA
CTCGTGAATCCTGAGTAAAGCCAGCAGATCAAACAAAATATTTCAAAGGT
TGCTAGAGGAGCATTCATGGCTTCCACAGAATAGTGGTTTCTGCAATCAT
GGAGGTGACAACATATGGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAA
AGTAACCCTTTCCTTCTTTCTCTGTGTCTCGTCCAACACGGATTGATGCC
CCACGGTTAGCAACACCCCATTTGAAAGTGTTGATGTCAGCTGTTTCATG
TTTGCCAGTGAGTCGGCGTTCATTGCCTTCACCATATGCGGCAATGTGCT
CACTGTGCCTCAGTCCAAGTTTCTCAATTGCTTTCTTAATAACCTCAAAG
CCTCCATCGTTCCTCATCGACTTGGTGCTGTAATTTGCGTGAGCACCAGC
TCCATTCCAGTCACCCTGAATTGGCTTGGGATCGAAAGCCTCGTGCCGAA
TTCGGCACGAGGGTTGCCTCACATTCCCCGCCC
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