CX290128

Overview
NameCX290128
Unique NameCX290128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig262 contig Ccv1_Contig262:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.093e-34
Identity = 69/131 (52.67%), Postives = 92/131 (70.23%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDM 469
            MK + S++T+D PDGV   +  +V+ V GPRG L RDF+HL+++      E  GK +L++  WFG RK  AAIRT  SH+ N+I GVTKG+RYKMR VYAHFPIN ++ +  + +EIRNFLGEK VR V +
Sbjct:    1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEM-----ERVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.093e-34
Identity = 73/184 (39.67%), Postives = 118/184 (64.13%), Query Frame = 2
Query:   80 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKD-ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 628
            K +     +D+P+GV+V++    ++V GP+G+L RDF H      +   EE GK+++ ++ +F +RK  A + T  +H+ N+ITGVTKG+RYKM+ V++HFPI+  +  +   +EI NF+GEK  R   +L GVTV    KV+  +++++G DIE V+++AA I Q   +   D R F+DGIY+
Sbjct:    3 KAVWVHALVDVPEGVEVEVEGSKVKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.404e-30
Identity = 69/182 (37.91%), Postives = 110/182 (60.44%), Query Frame = 2
Query:   98 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-----DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 628
            E +DIP+ V V+IN   ++V GP+G + RDF H+    +++  +E  K  + ++ +F  R+  A + T  SH+ N+I GV KGYRYK++ +Y+HFPI   + + N+ + I+NFLGEK        D +  I  + VK     ++++++G DIE V ++AA I     VK+KD R F DGIY+
Sbjct:    9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-------DRIAKIIGEDVKVTVKGEDIIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYI 178          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.404e-30
Identity = 68/185 (36.76%), Postives = 111/185 (60.00%), Query Frame = 2
Query:   95 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 649
            +E ++IP+ V V+++   + V+GP+G ++RDF H    F  + D     R + ++ +   RK  A + T  +H+ N+ITGV +GYRYK++ +++HFPI  S+   NK + IRNF+GEK  R   +   V V  S    ++++++G DIE V  +AA I +   V ++D R F+DGIY+ EK   L
Sbjct:    8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.552e-29
Identity = 65/195 (33.33%), Postives = 114/195 (58.46%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 658
            MK +   E ++IP G+ V I    I+V+GP+G++ +DF H++    +  ++     K+ ++  F  R+  A   + ++H+ N+ TGVTKGYRY ++ +Y HFP+   +  N   ++I+N +GEK +R+  ++ GV V     VK ++++++G DIE V ++AA I     +   D R F DGIY+ +K  I  E+
Sbjct:    1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-GIEIRKEDN----KIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSEQ 184          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 69/182 (37.91%), Postives = 108/182 (59.34%), Query Frame = 2
Query:   98 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 640
            E ++IP+GV+V +    ++V+GP+G+L R+ K+  +         T   K+ I   F  +K  A +RT  +H+ N+I GVT+G++Y+++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:    9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIF------TEDGKVVIYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.212e-27
Identity = 69/181 (38.12%), Postives = 105/181 (58.01%), Query Frame = 2
Query:   98 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 640
            E ++IP+GV+V I   V++V GP+G+L R+ K+  +         T   K+ I   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV     +  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:    9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIF------TEDGKVVIYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.212e-27
Identity = 67/184 (36.41%), Postives = 111/184 (60.33%), Query Frame = 2
Query:   98 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 646
            E +++P+GV V I+   ++V GP+G++ RDF H       + D       + ++++F   +  A +     H+ N+I GV  G+RYK++ +Y+HFPIN  +   +K I I NFLGEK +R   ++ GV V    +VK  +++++G D+E V+++AA I     VK+KD RKF+DGIY+ E+  I
Sbjct:    9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.607e-26
Identity = 69/182 (37.91%), Postives = 107/182 (58.79%), Query Frame = 2
Query:   98 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 640
            E ++IP+GV+V +   V++V+GP+G+L R+ K+  +         T   K+ +   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV    KV+  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:    9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIF------TEDGKVVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.607e-26
Identity = 71/182 (39.01%), Postives = 108/182 (59.34%), Query Frame = 2
Query:   98 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 640
            E ++IP+GV+V +    ++V+GP+G++ R+     +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:    9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
The following BLAST results are available for this feature:
BLAST of CX290128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL9_HAECO2.093e-3452.6760S ribosomal protein L9 (Fragment) OS=Haemonchus ... [more]
RL6_IGNH42.093e-3439.6750S ribosomal protein L6P OS=Ignicoccus hospitalis... [more]
RL6_STAMF1.404e-3037.9150S ribosomal protein L6P OS=Staphylothermus marin... [more]
RL6_DESK11.404e-3036.7650S ribosomal protein L6P OS=Desulfurococcus kamch... [more]
RL6_SULTO1.552e-2933.3350S ribosomal protein L6P OS=Sulfolobus tokodaii G... [more]
RL6_PYRKO4.228e-2737.9150S ribosomal protein L6P OS=Pyrococcus kodakaraen... [more]
RL6_THEON7.212e-2738.1250S ribosomal protein L6P OS=Thermococcus onnurine... [more]
RL6_AERPE7.212e-2736.4150S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_THEGJ1.607e-2637.9150S ribosomal protein L6P OS=Thermococcus gammatol... [more]
RL6_PYRAB1.607e-2639.0150S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02020G07SK IF1 Citrus clementina cDNA clone C02020G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290128 ID=CX290128; Name=CX290128; organism=Citrus clementina; type=EST; length=749bp
GGAATTCGGCACGAGGGGCAGCTCTAGCTTAAGCGTAGGAGGAGAAGAAG
AAGGAAGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAG
ACTATGGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTAT
TGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGA
ACCTCGACTTCCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTT
AAGATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAAC
TGCCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATC
GCTACAAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATC
GGTAACAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAA
GGTTCGAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATA
AGGTTAAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCT
CGCTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAGAACAAGGACAT
TAGGAAATTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTG
GAGAAGAATGATGATTAGCTTTCGAATTTTCTTGTCATAGTAATGTTATG
AATTTTTTTTTAATCTTTTTAATTTGCCTCTTACTTTGAGTTGAGGACA
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