CX290129

Overview
NameCX290129
Unique NameCX290129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10356 contig Ccv1_Contig10356:1436..1898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC9_ARATH (Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.180e-13
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFTK-EDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGM 253
            E+HP HLHG +F+VLG G G +    D             T  + P GW  LRF+A+NPG W FHCH++ H  +G+
Sbjct:  467 ESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGIWLFHCHMDAHLPLGI 542          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC8_ORYSJ (Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 2
Query:   26 SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 262
            +E HP HLHG DF++L +G G+F    +            T  +   GW  +RF+A+NPG W  HCH++ H  +G+ +V
Sbjct:  452 TENHPIHLHGFDFYLLAQGLGRFNPSMKSKYNLVDPQVRNTVAVPAGGWAVIRFMANNPGMWFMHCHLDAHLPLGLAMV 530          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC25_ORYSJ (Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC25 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVL 265
            E+HP H+HG +F++L +G G + K                 +  P G W  +RFVADNPG W  HCH + H  +G+ +VL
Sbjct:  475 ESHPMHIHGFNFFILAQGFGNYDKRRAERRFNLVDPQERNTIAVPTGGWAVIRFVADNPGMWYMHCHFDAHISLGLAMVL 554          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSJ (Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 2
Query:   23 LSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            +S+++P HLHG+D ++L +G G F  + +              ++ P G W A+RF+ DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  474 MSDSNPMHLHGYDVFLLAQGLGSFNAKRDIRKFNYHNPQLRNTILVPRGGWAAVRFITDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 567          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSI (Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 2
Query:   23 LSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            +S+++P HLHG+D ++L +G G F  + +              ++ P G W A+RF+ DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  474 MSDSNPMHLHGYDVFLLAQGLGSFNAKRDIRKFNYHNPQLRNTILVPRGGWAAVRFITDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 567          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC10_ARATH (Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            E HP HLHG +F+V+G G G + +K+D             T  +   GW A+RF ADNPG W  HCH+E   H   G+ +A  VE  G  PNQ++
Sbjct:  457 ENHPIHLHGFNFFVVGLGTGNYNSKKDSNKFNLVDPVERNTVGVPSGGWAAIRFRADNPGVWFMHCHLE--VHTTWGLKMAFLVEN-GKGPNQSI 548          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC8_ARATH (Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.054e-12
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFTK-EDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGM 253
            E+HP HLHG +F+VLG G G +    D             T  + P GW  LRF+A+NPG W FHCH++ H   G+
Sbjct:  465 ESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGVWLFHCHMDAHLPYGI 540          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC6_ORYSJ (Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.054e-12
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFTKE--DEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 262
            E+HP HLHG +F+V+ +G G    E                T  +   GW  +RFVADNPG WA HCHI+ HF IG+ +V
Sbjct:  478 ESHPMHLHGFNFFVVAQGFGNNDGEAAGAGEFNLVNPQERNTVAVPTGGWAVIRFVADNPGMWAMHCHIDSHFAIGLAMV 557          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.054e-12
Identity = 41/96 (42.71%), Postives = 52/96 (54.17%), Query Frame = 2
Query:   26 SETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            S+++P HLHG+D +VL +G G F  K D             T  +   GW A+RF+ADNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  485 SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLADNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 577          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC21_ORYSJ (Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC21 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.377e-12
Identity = 34/79 (43.04%), Postives = 41/79 (51.90%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 262
            E+HP HLHG  F+V+G G GKF    +            + V  P  GW A+RF ADNPG W  HCH + H   GM  V
Sbjct:  482 ESHPMHLHGFAFYVVGLGSGKFDDRRDPATYNLLDPPYQSTVSVPKAGWAAIRFRADNPGVWFMHCHFDRHMVWGMNTV 560          
The following BLAST results are available for this feature:
BLAST of CX290129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LAC9_ARATH6.180e-1342.11Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=... [more]
LAC8_ORYSJ8.072e-1336.71Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 ... [more]
LAC25_ORYSJ8.072e-1337.50Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC20_ORYSJ8.072e-1338.14Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC20_ORYSI8.072e-1338.14Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 ... [more]
LAC10_ARATH8.072e-1341.05Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 S... [more]
LAC8_ARATH1.054e-1242.11Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=... [more]
LAC6_ORYSJ1.054e-1242.50Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 ... [more]
LAC18_ORYSJ1.054e-1242.71Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC21_ORYSJ1.377e-1243.04Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020G08SK IF1 Citrus clementina cDNA clone C02020G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290129 ID=CX290129; Name=CX290129; organism=Citrus clementina; type=EST; length=463bp
GAATTCGGCACGAGGGCCAAACTTGAGTGAAACCCACCCTTGGCATTTGC
ATGGGCATGATTTTTGGGTATTAGGGCGCGGAGAAGGGAAGTTTACGAAA
GAAGATGAGAAGAAATTTAACTTGAAGAATCCACCATTGAAAAATACTGC
GGTGATATTCCCATATGGCTGGACTGCTTTAAGATTTGTTGCTGATAATC
CAGGTGCTTGGGCATTTCACTGCCATATTGAGCCCCATTTCCATATTGGA
ATGGGTGTGGTTCTTGCTCTTGGTGTTGAAACCGTTGGTAATATTCCAAA
CCAGGCGTTGGCTTGTGGTTTGACTGGGAAAAGGTTCATGAACCCTAAAC
AAAATTGAGGCTAGCTAGTTTGTTTTATGTACTTTATTCCTGGAGTTTCT
ATTGTTGTTTTGATATTTATATTAATAAAATTTCGGAGTTGAATAAAAAA
AAAAAAAAAAAAA
back to top