CX290129

Overview
NameCX290129
Unique NameCX290129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC23_ORYSJ (Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC23 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 33/86 (38.37%), Postives = 44/86 (51.16%), Query Frame = 2
Query:   11 RGPNL--SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGV 259
            +G N+   E HP HLHG+DF++L  G G F    +              V  P  GW  +RFVADNPG W  HCH++ H   G+ +
Sbjct:  458 QGTNIFAGENHPIHLHGYDFYILAEGLGNFDAGADTAKFNMEDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 543          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC17_ORYSJ (Putative laccase-17 OS=Oryza sativa subsp. japonica GN=LAC17 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 33/86 (38.37%), Postives = 44/86 (51.16%), Query Frame = 2
Query:   11 RGPNL--SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGV 259
            +G N+   E HP HLHG+DF++L  G G F    +              V  P  GW  +RFVADNPG W  HCH++ H   G+ +
Sbjct:  458 QGTNIFAGENHPIHLHGYDFYILAEGLGNFDAGADTGKFNVEDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 543          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC12_ORYSJ (Laccase-12/13 OS=Oryza sativa subsp. japonica GN=LAC12 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.833e-12
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 2
Query:   26 SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 253
            +E+HP HLHG +F+V+G+G G F   ++              V  P G W A+RF ADNPG W  HCH+E H   G+
Sbjct:  472 AESHPLHLHGFNFFVVGQGFGNFDPINDPAKFNLYDPVERNTVGVPAGGWVAIRFHADNPGVWFMHCHLEVHMSWGL 548          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: FIO1_SCHPO (Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe GN=fio1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.833e-12
Identity = 38/91 (41.76%), Postives = 46/91 (50.55%), Query Frame = 2
Query:   35 HPWHLHGHDFWVLGRGEGK--FTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPN 301
            HP+HLHGH F VL RGE       + E            T  I P  +  +RF+ADNPGAW  HCHIE H   G+   LA  +E    IP+
Sbjct:  417 HPFHLHGHTFQVLERGEENAGLYSDQESHTYYDNPMRRDTVEIEPGSFIVIRFIADNPGAWVIHCHIEWHMESGL---LATFIEAPEMIPS 504          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC5_ORYSJ (Putative laccase-5 OS=Oryza sativa subsp. japonica GN=LAC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 2
Query:   26 SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            +E+HP H+HG +F+V+G+G G +   ++              V  P G W A+RF+ADNPG W  HCH + H   G+ +   +     G +P+Q +
Sbjct:  445 AESHPLHMHGFNFFVVGQGFGNYDPVNDPANYNLVDPVERNTVSVPTGGWVAVRFLADNPGVWLMHCHFDVHLSWGLSMAWLV---NDGPLPSQKM 537          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC4_ARATH (Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 37/95 (38.95%), Postives = 48/95 (50.53%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            E HP HLHG +F+ +GRG G F    +              +  P G W  +RF ADNPG W  HCH+E   H   G+ +A  VE  G  PNQ++
Sbjct:  457 ENHPVHLHGFNFFEVGRGLGNFNSTKDPKNFNLVDPVERNTIGVPSGGWVVIRFRADNPGVWFMHCHLE--VHTTWGLKMAFLVEN-GKGPNQSI 548          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC22_ORYSJ (Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 35/95 (36.84%), Postives = 49/95 (51.58%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            E+HP HLHG +F+V+G+G G +                   +  P G WTA+RF +DNPG W  HCH E   H   G+ +A  V+  G  P++ L
Sbjct:  463 ESHPIHLHGFNFFVVGKGVGNYNPRTSPSTFNLIDPIERNTIGVPTGGWTAIRFRSDNPGVWFMHCHFE--VHTSWGLKMAFVVDN-GKRPSETL 554          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC1_ORYSJ (Putative laccase-1 OS=Oryza sativa subsp. japonica GN=LAC1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 32/76 (42.11%), Postives = 38/76 (50.00%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 253
            E HP HLHG  F+V+GRG G F +  +              V  P   W A+RF ADNPG W  HCH + H   GM
Sbjct:  476 ENHPMHLHGFTFYVVGRGSGTFDERRDPATYNLIDPPFQNTVSVPKSSWAAIRFRADNPGVWFMHCHFDRHVVWGM 551          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC6_ARATH (Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.988e-11
Identity = 32/83 (38.55%), Postives = 42/83 (50.60%), Query Frame = 2
Query:   14 GPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 262
            G   +E HP HLHGH F+V+G G G + ++                V    GW A+RFVA+NPG W  HCH + H   GM  +
Sbjct:  465 GTLTTENHPIHLHGHSFYVIGYGTGNYDQQTAKFNLEDPPYLNTIGVPVG-GWAAIRFVANNPGLWLLHCHFDIHQTWGMSTM 546          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC3_BOTFU (Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=lcc3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.429e-11
Identity = 31/81 (38.27%), Postives = 39/81 (48.15%), Query Frame = 2
Query:   20 NLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGV 259
            +++  HP HLHGHDF++LG G G +                    + P G W  L F  DNPGAW  HCHI  H   G+ V
Sbjct:  370 SINVPHPMHLHGHDFFLLGTGVGTYNNTINGPSLDYDNPTRRDVAMLPAGGWMVLAFQTDNPGAWLMHCHIAWHVSEGLAV 450          
The following BLAST results are available for this feature:
BLAST of CX290129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LAC23_ORYSJ4.006e-1238.37Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC17_ORYSJ4.006e-1238.37Putative laccase-17 OS=Oryza sativa subsp. japonic... [more]
LAC12_ORYSJ6.833e-1241.56Laccase-12/13 OS=Oryza sativa subsp. japonica GN=L... [more]
FIO1_SCHPO6.833e-1241.76Iron transport multicopper oxidase fio1 OS=Schizos... [more]
LAC5_ORYSJ8.924e-1233.33Putative laccase-5 OS=Oryza sativa subsp. japonica... [more]
LAC4_ARATH8.924e-1238.95Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV... [more]
LAC22_ORYSJ1.522e-1136.84Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC1_ORYSJ1.522e-1142.11Putative laccase-1 OS=Oryza sativa subsp. japonica... [more]
LAC6_ARATH1.988e-1138.55Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=... [more]
LAC3_BOTFU4.429e-1138.27Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020G08SK IF1 Citrus clementina cDNA clone C02020G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290129 ID=CX290129; Name=CX290129; organism=Citrus clementina; type=EST; length=463bp
GAATTCGGCACGAGGGCCAAACTTGAGTGAAACCCACCCTTGGCATTTGC
ATGGGCATGATTTTTGGGTATTAGGGCGCGGAGAAGGGAAGTTTACGAAA
GAAGATGAGAAGAAATTTAACTTGAAGAATCCACCATTGAAAAATACTGC
GGTGATATTCCCATATGGCTGGACTGCTTTAAGATTTGTTGCTGATAATC
CAGGTGCTTGGGCATTTCACTGCCATATTGAGCCCCATTTCCATATTGGA
ATGGGTGTGGTTCTTGCTCTTGGTGTTGAAACCGTTGGTAATATTCCAAA
CCAGGCGTTGGCTTGTGGTTTGACTGGGAAAAGGTTCATGAACCCTAAAC
AAAATTGAGGCTAGCTAGTTTGTTTTATGTACTTTATTCCTGGAGTTTCT
ATTGTTGTTTTGATATTTATATTAATAAAATTTCGGAGTTGAATAAAAAA
AAAAAAAAAAAAA
back to top