CX290133

Overview
NameCX290133
Unique NameCX290133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290133 vs. ExPASy Swiss-Prot
Match: PPP7_ARATH (Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana GN=PP7 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.421e-20
Identity = 64/201 (31.84%), Postives = 97/201 (48.26%), Query Frame = 2
Query:   11 YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVR---LWKAFTDCFNCLPVAALIDEKILCMHGGL---------------------------SPDLSHLDQVRNLPRPTAVP----DTGLLCDLLWSDPGRDVKGWGMND-RGVSYTFGPDKVSEFLKRHDLDLVCRAHQVVD 508
            Y+F GDYVDRG   LET  +LL++K+  P+  +LLRGNHE      +YGF  E   ++  +   +++    CF  LP+A++I  ++   HGGL                           S  L  LD++    R    P       +  D+LWSDP     G   N+ RG+   +GPD   +FLK+++L L+ R+H+  D
Sbjct:  108 YVFNGDYVDRGAWGLETFLVLLSWKVLMPDRVYLLRGNHESKYCTSMYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIISGRVYTAHGGLFRSPVLPKRTTRGKKNRRVVLLEPEPSSMKLGTLDELMQARRSVLDPPWEGSNLIPGDVLWSDPSM-TPGLSPNEQRGIGLLWGPDCTEDFLKKYELKLIIRSHEGPD 307          
BLAST of CX290133 vs. ExPASy Swiss-Prot
Match: PPE1_RAT (Serine/threonine-protein phosphatase with EF-hands 1 OS=Rattus norvegicus GN=Ppef1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 65/199 (32.66%), Postives = 98/199 (49.25%), Query Frame = 2
Query:   11 YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNV---RLWKAFTDCFNCLPVAALIDEKILCMHGGL--SPDLSHLDQV-RNLPRPTAVPDTGL-----------------------------LCDLLWSDPGRDVKGWGMN-DRGVSYTFGPDKVSEFLKRHDLDLVCRAHQ 499
            Y+F GD+VDRG  S+E + +LL   + YP +  L RGNHE   +N  YGF  E  +++ +   ++ +   + +  LP+  +ID +IL +HGG+  S DL+ L Q+ RN  +   +P                                 + DLLWSDP R  KG   N  RG    FGPD  S+ L ++ L +V R+H+
Sbjct:  197 YVFNGDFVDRGNNSMEILMILLVSFLVYPTDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGKKILQVLEELYTWLPIGTIIDNEILVIHGGISESTDLNILQQLQRNKMKSVLMPPMSTNQECNIKKNKAGPSEQSASEQLTKLEWEQIIDLLWSDP-RGKKGCYPNTSRGGGCYFGPDVTSKVLNKNQLKMVIRSHE 394          
BLAST of CX290133 vs. ExPASy Swiss-Prot
Match: PPP7L_ARATH (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 63/211 (29.86%), Postives = 97/211 (45.97%), Query Frame = 2
Query:   11 YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF---NVRLWKAFTDCFNCLPVAALIDEKILCMHGGLSPDLSHL---------------------------DQVRNLP------------RPTAVPDTG---LLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVSEFLKRHDLDLVCRAHQVVD 508
            Y+F G+YVD G   LET  LLL++K+  P   +LLRG+HE  S   +YGF +E   ++      ++K   +CF  LP+A++I  K+   HGGL  D+S                             D+  +LP            R    P  G   +  D+LWSDP +D   +   +RG+   +GPD  ++FL+ ++L  + R     D
Sbjct:  684 YVFNGNYVDIGAWGLETFLLLLSWKVLLPARVYLLRGSHESESCTSMYGFKNEVLTKYGDKGAAVYKKCLECFQLLPLASVIAGKVYTAHGGLFRDVSSFLSDKQERNRKRKRTQKKQTDNTVLDTEDRSESLPLGSLKDLSKVKRRVIDPPTEGSNLIPGDILWSDPSKDTGLFLNKERGIGLLWGPDCTAKFLQDNNLKWIIRGKGAPD 894          
BLAST of CX290133 vs. ExPASy Swiss-Prot
Match: PPE1_MOUSE (Serine/threonine-protein phosphatase with EF-hands 1 OS=Mus musculus GN=Ppef1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.869e-18
Identity = 65/208 (31.25%), Postives = 101/208 (48.56%), Query Frame = 2
Query:   11 YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNV---RLWKAFTDCFNCLPVAALIDEKILCMHGGL--SPDLSHLDQV-RNLPRPTAVP------DTG--------------------------------LLCDLLWSDPGRDVKGWGMN-DRGVSYTFGPDKVSEFLKRHDLDLVCRAHQ 499
            Y+F GD+VDRG  S+E + +LL   + YP +  L RGNHE   +N  YGF  E  +++ +   ++ +   + +  LP+  +ID +IL +HGG+  S DL+ L Q+ RN  +   +P      +TG                                 + D+LWSDP R  KG   N  RG    FGPD  S+ L ++ L ++ R+H+
Sbjct:  199 YVFNGDFVDRGNNSMEILMILLVCFLVYPSDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGRKILQVLEEVYTWLPIGTIIDNEILVIHGGISESTDLNTLHQLQRNKMKSVLMPPVLGNQETGEKRNKSASNYVEPRKVEPDKTPSEDLTKQEWEQIVDILWSDP-RGKKGCYPNTSRGGGCYFGPDVTSKVLSKNQLKMLIRSHE 405          
BLAST of CX290133 vs. ExPASy Swiss-Prot
Match: PPE2_HUMAN (Serine/threonine-protein phosphatase with EF-hands 2 OS=Homo sapiens GN=PPEF2 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   11 YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNV---RLWKAFTDCFNCLPVAALIDEKILCMHGGLS--PDLSHLDQV 310
            Y+F GD+VDRGK S+E + +L A+ + YP+ F L RGNHE   +N  YGF  E   ++ V    + +   D F  LP+A LIDEK+L +HGG+S   DL  LD++
Sbjct:  203 YVFNGDFVDRGKDSVEILMILFAFMLVYPKEFHLNRGNHEDHMVNLRYGFTKEVMNKYKVHGKEILRTLQDVFCWLPLATLIDEKVLILHGGVSDITDLELLDKI 307          
BLAST of CX290133 vs. ExPASy Swiss-Prot
Match: PPE2_MOUSE (Serine/threonine-protein phosphatase with EF-hands 2 OS=Mus musculus GN=Ppef2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 2
Query:   11 YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNV---RLWKAFTDCFNCLPVAALIDEKILCMHGGLSPDLSHLDQVRNLPR 325
            Y+F GD+VDRGK S+E + +L A+ + YP+ F L RGNHE   +N  YGF  E   ++ +   ++ +   D F  LP+A L+DEK+L +HGG+S D + L+ +  L R
Sbjct:  203 YVFNGDFVDRGKDSVEVLMVLFAFMLVYPKEFHLNRGNHEDHLVNLRYGFTKEVMHKYKIHGKKILRTLQDVFCWLPLATLVDEKVLVLHGGVS-DKTDLELLAKLDR 309          
BLAST of CX290133 vs. ExPASy Swiss-Prot
Match: PPE1_HUMAN (Serine/threonine-protein phosphatase with EF-hands 1 OS=Homo sapiens GN=PPEF1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.275e-17
Identity = 63/210 (30.00%), Postives = 97/210 (46.19%), Query Frame = 2
Query:   11 YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNV---RLWKAFTDCFNCLPVAALIDEKILCMHGGLS--PDLSHLDQV-RNLPRPTAVPDTGL----------------------------------------LCDLLWSDPGRDVKGWGMND-RGVSYTFGPDKVSEFLKRHDLDLVCRAHQ 499
            Y+F GD+VDRGK S+E + +L    + YP +  L RGNHE   +N  YGF  E   ++ +   R+ +   + +  LP+  ++D +IL +HGG+S   DL+ L +V RN  +   +P T                                          + D+LWSDP R   G   N  RG    FGPD  S+ L ++ L ++ R+H+
Sbjct:  196 YVFNGDFVDRGKNSIEILMILCVSFLVYPNDLHLNRGNHEDFMMNLRYGFTKEILHKYKLHGKRILQILEEFYAWLPIGTIVDNEILVIHGGISETTDLNLLHRVERNKMKSVLIPPTETNRDHDTDSKHNKVGVTFNAHGRIKTNGSPTEHLTEHEWEQIIDILWSDP-RGKNGCFPNTCRGGGCYFGPDVTSKILNKYQLKMLIRSHE 404          
BLAST of CX290133 vs. ExPASy Swiss-Prot
Match: PPP7I_ARATH (Serine/threonine-protein phosphatase 7 inactive homolog OS=Arabidopsis thaliana GN=At5g10900 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 57/185 (30.81%), Postives = 85/185 (45.95%), Query Frame = 2
Query:   11 YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC-ASINRIYGFYDECKR--RFNVRLWKAFTDCFNCLPVAALIDEKILCMHGGL---------SPD-------LSHLDQVRNLPRPTAVPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVSEFLKRHDLDLVCRAHQVVD 508
            ++F G+Y+ RG  SLE   +LLA+KI  PEN  LLRG+ E   S   +    D C R       L+    DCF  LP+A++I   +   HGGL         SP+       L  LD++          +   L  +LWS P         N +G+   +G D    FL++ +L ++ R+H+  D
Sbjct:  254 FVFNGNYIGRGSWSLEVFLVLLAWKIMMPENVILLRGSSETRVSAEELDFLKDICDRYGEHGPMLYSKCIDCFKMLPLASVISNSVYTTHGGLFQSCGVHEESPNPSLLLGSLEELDKIERRQAGENDDENITLNHVLWSCPWMADGLSESNYKGL--LWGADCTETFLQQSNLKMIIRSHEGPD 436          
The following BLAST results are available for this feature:
BLAST of CX290133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
PPP7_ARATH1.421e-2031.84Serine/threonine-protein phosphatase 7 OS=Arabidop... [more]
PPE1_RAT2.679e-1932.66Serine/threonine-protein phosphatase with EF-hands... [more]
PPP7L_ARATH1.736e-1829.86Serine/threonine-protein phosphatase 7 long form h... [more]
PPE1_MOUSE3.869e-1831.25Serine/threonine-protein phosphatase with EF-hands... [more]
PPE2_HUMAN6.599e-1844.76Serine/threonine-protein phosphatase with EF-hands... [more]
PPE2_MOUSE1.920e-1741.67Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_HUMAN3.275e-1730.00Serine/threonine-protein phosphatase with EF-hands... [more]
PPP7I_ARATH8.347e-1330.81Serine/threonine-protein phosphatase 7 inactive ho... [more]

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Properties
Property NameValue
Genbank descriptionC02020G12SK IF1 Citrus clementina cDNA clone C02020G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290133 ID=CX290133; Name=CX290133; organism=Citrus clementina; type=EST; length=673bp
CTAAAGCCATTATTTGTTTTTAGGGGACTATGTTGATCGTGGGAAGCAGA
GTTTGGAAACAATATGCCTTTTGCTTGCCTATAAGATTAAGTATCCGGAG
AACTTTTTTCTTTTACGAGGAAATCATGAATGTGCTTCTATTAATCGGAT
TTATGGATTTTATGATGAGTGCAAGCGACGGTTTAATGTGAGGCTTTGGA
AAGCCTTTACTGATTGTTTCAACTGCCTTCCTGTGGCGGCTCTTATAGAT
GAAAAGATATTGTGCATGCATGGCGGTCTTTCCCCTGATCTCTCACACTT
GGATCAAGTTAGAAATCTACCTCGTCCAACTGCTGTTCCCGACACTGGTT
TGCTCTGTGATTTGCTGTGGTCGGACCCTGGTAGAGATGTCAAGGGATGG
GGAATGAATGACAGAGGAGTTTCATACACATTTGGTCCTGACAAGGTGTC
GGAATTCTTAAAAAGGCATGATTTGGACCTTGTCTGCCGTGCCCATCAGG
TGGTCGACTTTCCTACTCTTTCTTTTTCCATTTTTTTCCTTTTCTTTTGG
TACCGGAGGGCCGGTAAAAATGTTCCGTTAGCTCTTGCAACTTCAATCAT
GATGTGATTTGTTCTAGGTTGTGGAGGATGGGTATGAGTTCTTTGCTGAT
AGGCAACTTGTTACCATATTCTC
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