CX290136

Overview
NameCX290136
Unique NameCX290136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290136_ssr215 microsatellite CX290136_ssr215:215..226. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.546e-37
Identity = 89/177 (50.28%), Postives = 105/177 (59.32%), Query Frame = 3
Query:   51 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL-SWQDVHHHQAPSYASP------------------ECRIDLGSSSKCNNKISAMRTPTNKATEERV-------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            +QLCY+ C+FC+ VLAVSVP SSL   VTVRCGHCSNL SV ++     L S  ++ H   P    P                     +   +S+   N+   M T   ++ +           NRPPEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct:   23 DQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 199          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB1_ORYSJ (Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.484e-36
Identity = 74/156 (47.44%), Postives = 99/156 (63.46%), Query Frame = 3
Query:   36 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            +    E +CY+ CN+CN +L V+VP +   +IVTVRCGHC+ + S+++A   Q+ + QD   HQ  +             +  N + S    P   + ++    RPPEKRQRVPSAYN+FIKEEIQRIK +NP+ISHREAFS AAKNWAH P +HF
Sbjct:    3 VQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQD---HQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHF 155          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB4_ARATH (Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 7.432e-32
Identity = 75/163 (46.01%), Postives = 100/163 (61.35%), Query Frame = 3
Query:   48 PEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAA-------FQSLSWQD-VHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEE----RVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 500
            P Q+C++ C FC  +L VSVP +SL  +VTVRCGHC++L SVN+  A         SLS  D     +  +    E      +  K N+  + + +  N+  +     +VVN+PPEKRQR PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP  H
Sbjct:   18 PGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YABDL_ORYSJ (Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.024e-29
Identity = 72/149 (48.32%), Postives = 91/149 (61.07%), Query Frame = 3
Query:   51 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAF-QSLSWQDVHHHQAPSYASP--ECRIDLGSSSKCNNKISAMRTPTNKATEERV--VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWA 482
            E LCY+ C +CN VLAV VPC  L+D VTV+CGHC+NL  ++      Q LS  D   H    +  P  +CR          N+   + +PT+     R   V +PPEK+ R+PSAYN+F++EEIQRIKA  PDI HREAFS AAKNWA
Sbjct:    8 EHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTD---HPLGPFQGPCTDCR---------RNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: CRC_ARATH (Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.231e-27
Identity = 64/146 (43.84%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   51 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 488
            E L Y+ C+ CN +LAV +P   +LD VTV+CGHC NL  +      Q      +   Q  S+   + +   GSSS  ++  S+ + P+        V +PPEK+QR+PSAYN+F+++EIQRIK+ NP+I HREAFS AAKNWA +
Sbjct:   19 EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTL---QMQSFGGSDYK--KGSSSSSSSSTSSDQPPSPSPP---FVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB7_ORYSJ (Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 70/154 (45.45%), Postives = 93/154 (60.39%), Query Frame = 3
Query:   51 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWS-VNM----AAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHI 497
            E+L  + C+FC  VL VSVPCSS+L +V V+CGHCS + S VN+     +A   L+ Q++     P   S E   D        +   A   P   A    V N+PP ++QR PSAYN F+KEEI+RIK+  P+I+H++AFSTAAKNWAH P I
Sbjct:   14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIELTPQELDAGPPPGEYSDESSGDDREGRDAEDDAPA---PAAAA----VANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRI 160          
The following BLAST results are available for this feature:
BLAST of CX290136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB3_ARATH1.546e-3750.28Axial regulator YABBY 3 OS=Arabidopsis thaliana GN... [more]
YAB1_ORYSJ8.484e-3647.44Protein YABBY 1 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ARATH7.432e-3246.01Axial regulator YABBY 4 OS=Arabidopsis thaliana GN... [more]
YABDL_ORYSJ2.024e-2948.32Protein DROOPING LEAF OS=Oryza sativa subsp. japon... [more]
CRC_ARATH3.231e-2743.84Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC ... [more]
YAB7_ORYSJ5.512e-2745.45Protein YABBY 7 OS=Oryza sativa subsp. japonica GN... [more]

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Properties
Property NameValue
Genbank descriptionC02020H03SK IF1 Citrus clementina cDNA clone C02020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290136 ID=CX290136; Name=CX290136; organism=Citrus clementina; type=EST; length=504bp
AGGAATTCGGCACGAGGGACATGTCGAGCTGCGGCATCGATGTTGCGCCT
GAGCAACTCTGCTACATCCCCTGCAACTTTTGCAACATAGTTCTCGCGGT
GAGTGTTCCTTGCAGTAGCTTGCTTGACATCGTGACTGTCCGATGCGGGC
ACTGCTCCAATCTATGGTCCGTGAATATGGCAGCCGCTTTTCAGTCACTG
TCATGGCAAGATGTTCATCATCATCAGGCTCCAAGTTACGCGTCACCCGA
GTGCAGAATTGATTTGGGTTCCTCGTCCAAATGCAACAACAAGATTTCAG
CAATGCGAACACCCACTAACAAGGCCACTGAGGAGAGGGTTGTGAATCGT
CCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCATACAACCAGTTTATAAA
AGAGGAGATTCAGAGGATCAAGGCTAATAATCCAGATATCAGCCACAGGG
AAGCATTCAGTACTGCCGCAAAGAATTGGGCACACTTCCCTCACATCCAT
TTTG
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