CX290139

Overview
NameCX290139
Unique NameCX290139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_SHIBS (Elongation factor Tu OS=Shigella boydii serotype 4 (strain Sb227) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1
Query:  112 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGV 388          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_SHESA (Elongation factor Tu OS=Shewanella sp. (strain ANA-3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1
Query:   91 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            L  ALD+ I EP+R  DKP  +P++DV+ I G GTV  GRVE G+++ G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   SK         F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   +K+    P+ ++         RFA+R+  +TV  GV
Sbjct:  192 LAAALDSYIPEPERDIDKPFLMPIEDVFSISGRGTVVTGRVERGIVRVGDEVEIVGIRATTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVL--SKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMKVTLICPIAMDEGL------RFAIREGGRTVGAGV 388          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_SALTY (Elongation factor Tu OS=Salmonella typhimurium GN=tufA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1
Query:  112 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGV 388          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_SALTI (Elongation factor Tu OS=Salmonella typhi GN=tufA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1
Query:  112 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGV 388          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_SALPB (Elongation factor Tu OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1
Query:  112 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGV 388          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_SALPA (Elongation factor Tu OS=Salmonella paratyphi A GN=tuf1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1
Query:  112 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGV 388          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_SALCH (Elongation factor Tu OS=Salmonella choleraesuis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1
Query:  112 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGV 388          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_SALAR (Elongation factor Tu OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1
Query:  112 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGV 388          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_SALAI (Elongation factor Tu OS=Salinispora arenicola (strain CNS-205) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 58/213 (27.23%), Postives = 101/213 (47.42%), Query Frame = 1
Query:   91 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG 717
            L+ A+D +I +P+R ++KP  +P++DV+ I G GTV  GR E G+LKP     +V        T    +EM  + L EA  G+NVG  ++ V  +D++RG V    K   A     F + V I++   + G  + P    +      + +++   +    G E+      +  GD   + +   +P+ +E         +FA+R+  +TV  G
Sbjct:  194 LMTAVDTSIPQPERETEKPFLMPIEDVFTITGRGTVVTGRAERGILKPNEEVELVGIREKSTKTTCTGIEMFRKLLDEARAGENVGLLLRGVKREDVERGMVV--IKPGTATPHTEFEATVYILSK--EEGGRHTPFFQNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTTMTVKLIQPIAMEENL------KFAIREGGRTVGAG 390          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EFTU_RICSI (Elongation factor Tu OS=Rickettsia sibirica GN=tuf PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 58/215 (26.98%), Postives = 107/215 (49.77%), Query Frame = 1
Query:   91 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            L+DA+D+ I +P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  +     GL     T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++   + G  + P  + +      + +++   I      +L  + +++  GD     +   KP+ ++         +F++R+  +TV  GV
Sbjct:  192 LMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI--VGLKDTQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDKFEAEVYVLSK--EEGGRHTPFTNDYRPQFYFRTTDVTGTI------KLPADKQWVMPGDNATFTVELIKPIAMQEGL------KFSIREGGRTVGAGV 388          
The following BLAST results are available for this feature:
BLAST of CX290139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SHIBS7.225e-1330.14Elongation factor Tu OS=Shigella boydii serotype 4... [more]
EFTU_SHESA7.225e-1329.11Elongation factor Tu OS=Shewanella sp. (strain ANA... [more]
EFTU_SALTY7.225e-1330.14Elongation factor Tu OS=Salmonella typhimurium GN=... [more]
EFTU_SALTI7.225e-1330.14Elongation factor Tu OS=Salmonella typhi GN=tufA P... [more]
EFTU_SALPB7.225e-1330.14Elongation factor Tu OS=Salmonella paratyphi B (st... [more]
EFTU_SALPA7.225e-1330.14Elongation factor Tu OS=Salmonella paratyphi A GN=... [more]
EFTU_SALCH7.225e-1330.14Elongation factor Tu OS=Salmonella choleraesuis GN... [more]
EFTU_SALAR7.225e-1330.14Elongation factor Tu OS=Salmonella arizonae (strai... [more]
EFTU_SALAI7.225e-1327.23Elongation factor Tu OS=Salinispora arenicola (str... [more]
EFTU_RICSI7.225e-1326.98Elongation factor Tu OS=Rickettsia sibirica GN=tuf... [more]

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Properties
Property NameValue
Genbank descriptionC02020H06SK IF1 Citrus clementina cDNA clone C02020H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290139 ID=CX290139; Name=CX290139; organism=Citrus clementina; type=EST; length=721bp
GCACGAGGCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGAT
TGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACG
CTCTTGACAATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGT
CTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGT
GGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTG
GCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCACCACGAA
GCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACGTGAAGAA
CGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGG
ATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCATCATG
AACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCA
CACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATTGATA
GGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGA
GATGCTGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAAAC
CTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCGTTAGGGACATGCGTC
AGACTGTTGCTGTTGGTGTGA
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