CX290139

Overview
NameCX290139
Unique NameCX290139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:639..1359. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 2.049e-100
Identity = 166/237 (70.04%), Postives = 206/237 (86.92%), Query Frame = 1
Query:   10 PFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            PFV ISGF GDNM+ERS  + WYKG TL++ALD +  PKRP+DKPLRLPLQDVYKIGG+GTVPVGRVETG+++PGM VTF P+G+TTEVKSVEMHHE + EA+PGDNVGFNVKNV++KD+KRGFVAS++K+DPA+   +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ KF  +  K+D+RSGK LE+ PK +K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAVGV
Sbjct:  185 PFVAISGFVGDNMVERSDKMPWYKGKTLVEALDTMEPPKRPTDKPLRLPLQDVYKIGGVGTVPVGRVETGIIRPGMNVTFAPAGVTTEVKSVEMHHEQMPEAVPGDNVGFNVKNVSIKDIKRGFVASDAKNDPAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGV 421          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 2.049e-100
Identity = 180/249 (72.29%), Postives = 206/249 (82.73%), Query Frame = 1
Query:   10 PFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            PFVPISG+ GDNM+E S N+ W+KG             +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGV
Sbjct:  189 PFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGV 437          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 2.049e-100
Identity = 180/249 (72.29%), Postives = 206/249 (82.73%), Query Frame = 1
Query:   10 PFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            PFVPISG+ GDNM+E S N+ W+KG             +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGV
Sbjct:  189 PFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGV 437          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.676e-100
Identity = 176/249 (70.68%), Postives = 207/249 (83.13%), Query Frame = 1
Query:   10 PFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            PFVPISGF GDNMIE STN  WYKG             TLL+A+D I  P RP+DKPLRLPLQDVYKI GIGTVPVGRVETGV+KPGMVVTF P+ +TTEVKSVEMHH+ LQ   PGDNVGFNVKNV+VK+++RG VA +SK+DP     +F +QVI++NHPGQ+GNGYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E +PKF+K+GDA +VKMIP+KPM VE+F+D+PPLGRFAVRDMRQTVAVGV
Sbjct:  188 PFVPISGFNGDNMIEASTNCPWYKGWEKETKAGKSTGKTLLEAIDAIEPPVRPTDKPLRLPLQDVYKISGIGTVPVGRVETGVIKPGMVVTFAPANVTTEVKSVEMHHQQLQAGNPGDNVGFNVKNVSVKEVRRGNVAGDSKNDPPAGCDSFNAQVIVLNHPGQVGNGYAPVLDCHTAHIACKFAELLEKIDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGV 436          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 3.495e-100
Identity = 177/244 (72.54%), Postives = 206/244 (84.43%), Query Frame = 1
Query:    1 ARGPFVPISGFEGDNMIERSTNLD----WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            A+ P VP SG+ G+N+ ER+        WYKGP LL+ALDN + PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTF PSGL+TEVKSVEMHHEAL +A PGDNVGFNVKNV+VKDLKRG+V  +SK+DP +  A+F +QVII+NHPG+I  GYAPVLDCHT+HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGV
Sbjct:  186 AKVPKVPTSGWTGENLFERTDKTHALGKWYKGPCLLEALDNCDPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGLIKPGMVVTFAPSGLSTEVKSVEMHHEALPQAGPGDNVGFNVKNVSVKDLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGV 429          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 5.962e-100
Identity = 173/239 (72.38%), Postives = 206/239 (86.19%), Query Frame = 1
Query:   13 FVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKE---PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            FVPISG+ GDNM+ERS  ++WYKGPTLL+ALD I EPKRP DKPLR+PLQDVYKIGGIGTVPVGRVETG++KPGMVVTF P+GL+TEVKSVEMHHE L EA PGDNVGFNVKNV+VK++KRG VA +SK+DP +E   F +QVI++NHPGQI  GY+PVLDCHT+HIA KF+E+V K+DRR+G  + KE      LKNGDA MV++ P++PM VE+F++YPPLGRFAVRDMRQTVAVGV
Sbjct:  190 FVPISGWNGDNMLERSDKMEWYKGPTLLEALDAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGV 428          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 7.787e-100
Identity = 177/249 (71.08%), Postives = 208/249 (83.53%), Query Frame = 1
Query:   10 PFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            PFVPISG+ GDNM++ STN+ W+KG             TLL+A+D I  P RPSDKPLRLPLQDVYKIGGIGTVPVGRVETG +K GMVV F P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRS K +E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGV
Sbjct:  187 PFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAIDAIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGV 434          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.017e-99
Identity = 175/249 (70.28%), Postives = 205/249 (82.33%), Query Frame = 1
Query:   10 PFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            PFVPISG+ GDNMIE STN  WYKG             TLL+A+D I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTF P+G+TTEVKSVEMHHE L E +PGDNVGFNVKNV+VK+++RG V  +SK+DP +   +F +QVI++NHPGQI  GY+PVLDCHT+HIA KF  LV KIDRR+GK+LE+ PKF+K+GDA +VKM+PTKPM VE F+DYPPLGRFAVRDMRQTVAVGV
Sbjct:  187 PFVPISGWNGDNMIEPSTNCPWYKGWEKETKSGKVTGKTLLEAIDAIEPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPAGVTTEVKSVEMHHEQLAEGVPGDNVGFNVKNVSVKEIRRGNVCGDSKNDPPKGCDSFNAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLVEKIDRRTGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGV 435          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.735e-99
Identity = 178/250 (71.20%), Postives = 208/250 (83.20%), Query Frame = 1
Query:   10 PFVPISGFEGDNMIERSTNLDWYKG-------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            P +P+SG+ GDNMIE S N+ WYKG              TLL+ALDNI  P RPS KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTF P+ L+TEVKSVEMHHE+L EALPGDNVGFNVKNV++KD++RG VAS+SK+DPA EAA+F +QVII+NHPG+I  GY PVLDCHT+HIA KF+EL+ KIDRRSGK +E EPK +K+GDA ++ +IP+K M VE+FS YPPLGRFAVRDMRQTVAVGV
Sbjct:  190 PVLPVSGWHGDNMIEPSPNMSWYKGWEVEYKDTGKHTGKTLLEALDNIPLPARPSSKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFCPANLSTEVKSVEMHHESLPEALPGDNVGFNVKNVSIKDIRRGMVASDSKNDPAIEAASFKAQVIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGV 439          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.266e-99
Identity = 168/238 (70.59%), Postives = 206/238 (86.55%), Query Frame = 1
Query:   10 PFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELE-KEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            PFVPISGF+GDNMIE STN+ WYKGPTL+ ALD++  P+RP DKPLRLPLQDVYKI GIGTVPVGRVETG+LKPG +V F PSG+++E KS+EMHH AL +A+PGDNVGFNV+N+ VKD+KRG VAS++K+ PA    +FT+QVI+MNHPGQI  GY PVLDCHTSHIA KF EL++KIDRR+GK +E  EP+++KNGD+ +VK++PTKP+ VE F+ +PPLGRFAVRDM+QTVAVGV
Sbjct:  187 PFVPISGFQGDNMIEPSTNMPWYKGPTLIGALDSVTPPERPVDKPLRLPLQDVYKISGIGTVPVGRVETGILKPGTIVQFAPSGVSSECKSIEMHHTALAQAIPGDNVGFNVRNLTVKDIKRGNVASDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGV 424          
The following BLAST results are available for this feature:
BLAST of CX290139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_CRYPV2.049e-10070.04Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A2_RAT2.049e-10072.29Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_MOUSE2.049e-10072.29Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A_ASPOR2.676e-10070.68Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_PORYE3.495e-10072.54Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_DICDI5.962e-10072.38Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A3_RHIRA7.787e-10071.08Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_CANAL1.017e-9970.28Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A_HYDAT1.735e-9971.20Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_ENTHI2.266e-9970.59Elongation factor 1-alpha OS=Entamoeba histolytica... [more]

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Properties
Property NameValue
Genbank descriptionC02020H06SK IF1 Citrus clementina cDNA clone C02020H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290139 ID=CX290139; Name=CX290139; organism=Citrus clementina; type=EST; length=721bp
GCACGAGGCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGAT
TGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACG
CTCTTGACAATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGT
CTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGT
GGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTG
GCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCACCACGAA
GCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACGTGAAGAA
CGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGG
ATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCATCATG
AACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCA
CACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATTGATA
GGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGA
GATGCTGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAAAC
CTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCGTTAGGGACATGCGTC
AGACTGTTGCTGTTGGTGTGA
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