CX290139

Overview
NameCX290139
Unique NameCX290139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 8.058e-97
Identity = 168/240 (70.00%), Postives = 198/240 (82.50%), Query Frame = 1
Query:    1 ARGPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            A+  FVPISGF+GDN+ E STN+ WYKGPTL  ALD+   PKRP  KPLRLPLQDVYKIGGIGTVPVGRVETGVLK GMV+TF P G + E KSVEMHHE + EA PG+NVGFNVK ++VKD+KRGFVAS+SK+DPA +  +F S  I+MNHPG+I  GY PV+DCHT+HIA KF EL+TK D+RSGK  E+ PKFLK GDAG++++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGV
Sbjct:  186 AKMNFVPISGFQGDNIQENSTNMPWYKGPTLCAALDSFKIPKRPIAKPLRLPLQDVYKIGGIGTVPVGRVETGVLKAGMVITFAPKGCSAECKSVEMHHEEVPEAAPGNNVGFNVKGLSVKDIKRGFVASDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGV 425          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.052e-96
Identity = 167/248 (67.34%), Postives = 206/248 (83.06%), Query Frame = 1
Query:   13 FVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            FVPISG+ GDNM+E ST + W+KG             +L++ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGV
Sbjct:  190 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKSLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 437          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.344e-96
Identity = 171/248 (68.95%), Postives = 201/248 (81.05%), Query Frame = 1
Query:   13 FVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            FVPISG+ GDNM+E S    WYKG             TL++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTF P+ LTTEVKSVEMHHEAL EALPGDNVGFNVKN++VK+L+RG+VA +SK+ P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E+ PK +K+GDA +V + PTKPM VE F ++PPLGRFAVRDMRQTVAVGV
Sbjct:  190 FVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGV 437          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 350.903 bits (899), Expect = 3.999e-96
Identity = 169/248 (68.15%), Postives = 203/248 (81.85%), Query Frame = 1
Query:   13 FVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            FVPISG+ GDNM+E S  + W+KG              L+DALD I  P+RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVV F P  L TEVKSVEMHHEAL EA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KFSE+  K DRR+GK  E EPK +K+GDA ++ ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGV
Sbjct:  190 FVPISGWHGDNMLEPSEKMPWFKGWSVERKEGKAEGKCLIDALDAILPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGLLKPGMVVNFAPVNLVTEVKSVEMHHEALTEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 437          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.422e-95
Identity = 158/236 (66.95%), Postives = 201/236 (85.17%), Query Frame = 1
Query:   13 FVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            F+PISGFEGDN+IE+S    WYKG TL++ALD +  PKRP DKPLR+PLQ VYKIGGIGTVPVGRVETG+LK GMV+ F PS + +E KSVEMH E L+EA PGDN+GFNVKNV+VK++KRG+VAS++K++PA+  + FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  + +KID+RSGK +E+ PK +K+GD+ +V + P KPMVVETF++YPPLGRFA+RDMRQT+AVG+
Sbjct:  188 FIPISGFEGDNLIEKSDKTPWYKGRTLIEALDTMQPPKRPYDKPLRIPLQGVYKIGGIGTVPVGRVETGILKAGMVLNFAPSAVVSECKSVEMHKEVLEEARPGDNIGFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGI 423          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.850e-95
Identity = 162/239 (67.78%), Postives = 200/239 (83.68%), Query Frame = 1
Query:    4 RGPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            R PF+PISGF GDNMIE S N+ WYKGPTLL+ALDN++ PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM VTF P  ++TEVKSVEMHHE++ +ALPGDNVGFNV NV+V+D+ RG V  ++K+DP  +  +  +QVI+MNHP  I  GY PV+DCHT+HIA KF ++++++D+R+GK L + P  +KNG + M +++P+KPM VETFSDYPPLGRFAVRDMRQTVAVG+
Sbjct:  189 RIPFIPISGFNGDNMIEHSANMPWYKGPTLLEALDNVHPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMTVTFAPVNVSTEVKSVEMHHESIPQALPGDNVGFNVNNVSVEDIHRGNVCGDAKNDPPCKTES-DAQVIVMNHPSGIRPGYCPVVDCHTAHIACKFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGI 426          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.059e-91
Identity = 156/238 (65.55%), Postives = 195/238 (81.93%), Query Frame = 1
Query:   13 FVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 690
            FVPISG+ GDNM+E ST + W+KG              L++ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  176 FVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.472e-90
Identity = 162/248 (65.32%), Postives = 197/248 (79.44%), Query Frame = 1
Query:   13 FVPISGFEGDNMIERSTNLDWYKGPTL------------LDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 720
            FVPISG+ GDNM+E S+N+ W KG  +              ALD I  P RP+D+ LRLPL DVYKIGGIGTVPVGR+ETG+LKPG VV F P+ +TTEVKSVEMHHEAL EA+PGDNVGFNVKNV+VK+L+RG+VA +SK +P + A NFT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGV
Sbjct:  139 FVPISGWHGDNMLEPSSNMRWLKGWKVERINGNGEGKCGSXALDAILPPPRPTDQALRLPLPDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 386          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 4.283e-90
Identity = 155/238 (65.13%), Postives = 194/238 (81.51%), Query Frame = 1
Query:   13 FVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 690
            FVPISG+ GDNM+E ST + W+KG              L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  176 FVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CX290139 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 4.283e-90
Identity = 155/238 (65.13%), Postives = 194/238 (81.51%), Query Frame = 1
Query:   13 FVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 690
            FVPISG+ GDNM+E ST + W+KG              L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  176 FVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of CX290139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A1_EUPCR8.058e-9770.00Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_BOMMO1.052e-9667.34Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_APIME2.344e-9668.95Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A2_DROME3.999e-9668.15Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_PLAFK4.422e-9566.95Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_BLAHO9.850e-9567.78Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A_SPOFR5.059e-9165.55Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_RHYAM1.472e-9065.32Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_HELZE4.283e-9065.13Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI4.283e-9065.13Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionC02020H06SK IF1 Citrus clementina cDNA clone C02020H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290139 ID=CX290139; Name=CX290139; organism=Citrus clementina; type=EST; length=721bp
GCACGAGGCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGAT
TGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACG
CTCTTGACAATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGT
CTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGT
GGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTG
GCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCACCACGAA
GCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACGTGAAGAA
CGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGG
ATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCATCATG
AACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCA
CACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATTGATA
GGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGA
GATGCTGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAAAC
CTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCGTTAGGGACATGCGTC
AGACTGTTGCTGTTGGTGTGA
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