CX290144

Overview
NameCX290144
Unique NameCX290144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: MCAT_ARATH (Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 58/209 (27.75%), Postives = 88/209 (42.11%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRL----------TVQTEKSPYRYRGIFHALSTVLREEG-PRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILG 594
            GA AG        P ++++ RL          T  +  +  +Y G       VLR EG  R L++G FP+    VP     FA YE+ K +L      G ++ S L   + +              YP DV++  +Q+  +K                 Y G +DAFRK ++ EG   LYKG  P   + VP+ +  F+ YE+ +  LG
Sbjct:  111 GAGAGFAVSFLACPTELIKCRLQAQGALAGASTTSSVVAAVKYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAYEAFKRFLA-----GGSDTSSLGQGSLIMAGGVAGASFWGIVYPTDVVKSVLQVDDYKNP--------------RYTGSMDAFRKILKSEGVKGLYKGFGPAMARSVPANAACFLAYEMTRSSLG 300          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: UCP3_HUMAN (Mitochondrial uncoupling protein 3 OS=Homo sapiens GN=UCP3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 56/200 (28.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   10 AGIIAMSATYPMDMVRGRLTVQTEKSPYR------YRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            A   A   T+P+D  + RL +Q E    +      YRG+   + T++R EGP + Y G    +   + +  +   +Y+S+K       P G A++S  S+TTR+               P DV++ R Q       +S+ +G   +R+  +Y+G +DA+R   R EG   L+KG +PN ++         VTY+++K+ L
Sbjct:   23 AACFADLVTFPLDTAKVRLQIQGENQAVQTARLVQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYT---PKG-ADNS--SLTTRILAGCTTGAMAVTCAQPTDVVKVRFQ-------ASIHLGP--SRSDRKYSGTMDAYRTIAREEGVRGLWKGTLPNIMRNAIVNCAEVVTYDILKEKL 207          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT1_RABIT (ADP/ATP translocase 1 OS=Oryctolagus cuniculus GN=SLC25A4 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 52/196 (26.53%), Postives = 86/196 (43.88%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYR--YRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            G  AG  ++   YP+D  R RL     K   +  + G+ + L+ + + +G R LY+G+  SV G++ Y    F VY++ K  L   K + +     ++ T                 YP D +RRRM M             GR  A + Y G +D ++K  + EG  A +KG   N ++ +   +   V Y+ +K
Sbjct:  120 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFSGLGNCLTKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTV--------TAVAGLVSYPFDTVRRRMMM-----------QSGRKGADIMYTGTVDCWKKIAKDEGAKAFFKGAWSNVLRGMGG-AFVLVLYDEIK 295          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT1_MOUSE (ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 51/196 (26.02%), Postives = 82/196 (41.84%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEK--SPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            G  AG  ++   YP+D  R RL     K  S   + G+   L+ + + +G + LY+G+  SV G++ Y    F VY++ K          L +   + +                  YP D +RRRM M             GR  A + Y G +D +RK  + EG  A +KG   N ++ +   +   V Y+ +K
Sbjct:  120 GGAAGATSLCFVYPLDFARTRLAADVGKGSSQREFNGLGDCLTKIFKSDGLKGLYQGFSVSVQGIIIYRAAYFGVYDTAKGM--------LPDPKNVHIIVSWMIAQSVTAVAGLVSYPFDTVRRRMMM-----------QSGRKGADIMYTGTLDCWRKIAKDEGANAFFKGAWSNVLRGMGG-AFVLVLYDEIK 295          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: UCP5_HUMAN (Brain mitochondrial carrier protein 1 OS=Homo sapiens GN=SLC25A14 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 58/216 (26.85%), Postives = 93/216 (43.06%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYR-----YRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVEIRISD*SLWNF 633
            G  A I+A   T+P+D+ + RL VQ +    R     YRG+FHAL  + +EEG  ALY G  P+++    Y  +   +Y+SLK   ++       ED  L +   +               P DV++ RMQ  G                 L    MI +F    + EG   L++G+VP + +    + +    Y++ K  L +   + D  L +F
Sbjct:   47 GGLASIVAEFGTFPVDLTKTRLQVQGQSIDARFKEIKYRGMFHALFRICKEEGVLALYSGIAPALLRQASYGTIKIGIYQSLKRLFVER-----LEDETLLI--NMICGVVSGVISSTIANPTDVLKIRMQAQG----------------SLFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVYDITKKHLILSGMMGDTILTHF 239          

HSP 2 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            G  +G+I+ +   P D+++ R+  Q         G F     + ++EG R L+RG  P+       VG+   VY+  K  LI +  +G       ++ T                 P+DV+R RM           ++G       L Y G +D   K  +HEGF ALYKG  PN +++ P   + F+TYE +K
Sbjct:  148 GVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSF---IDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVYDITKKHLILSGMMGD------TILTHFVSSFTCGLAGALASNPVDVVRTRMMN------QRAIVG----HVDL-YKGTVDGILKMWKHEGFFALYKGFWPNWLRLGPWNIIFFITYEQLK 321          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: UCP3_MOUSE (Mitochondrial uncoupling protein 3 OS=Mus musculus GN=Ucp3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 56/197 (28.43%), Postives = 90/197 (45.69%), Query Frame = 1
Query:   10 AGIIAMSATYPMDMVRGRLTVQTEK---SPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            A   A   T+P+D  + RL +Q E       +YRG+   + T++R EGPR+ Y G    +   + +  +   +Y+S+K +     P G A+ S  SV  R+               P DV++ R Q +       + +G G  R   +Y G +DA+R   R EG   L+KG  PN  +         VTY+++K+ L
Sbjct:   23 AACFADLLTFPLDTAKVRLQIQGENPGAQSVQYRGVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFASIRIGLYDSVKQFYT---PKG-ADHS--SVAIRILAGCTTGAMAVTCAQPTDVVKVRFQAM-------IRLGTGGER---KYRGTMDAYRTIAREEGVRGLWKGTWPNITRNAIVNCAEMVTYDIIKEKL 203          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT1_BOVIN (ADP/ATP translocase 1 OS=Bos taurus GN=SLC25A4 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 52/196 (26.53%), Postives = 86/196 (43.88%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYR--YRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            G  AG  ++   YP+D  R RL     K   +  + G+ + ++ + + +G R LY+G+  SV G++ Y    F VY++ K  L   K + +     ++ T                 YP D +RRRM M             GR  A + Y G +D +RK  + EG  A +KG   N ++ +   +   V Y+ +K
Sbjct:  120 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTV--------TAVAGLVSYPFDTVRRRMMM-----------QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLVLYDEIK 295          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: UCP3_RAT (Mitochondrial uncoupling protein 3 OS=Rattus norvegicus GN=Ucp3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 54/197 (27.41%), Postives = 87/197 (44.16%), Query Frame = 1
Query:   10 AGIIAMSATYPMDMVRGRLTVQTEK---SPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            A   A   T+P+D  + RL +Q E       +YRG+   + T++R EGPR+ Y G    +   + +  +   +Y+S+K +     P G    S   V  R+               P DV++ R Q +       + +G G  R   +Y G +DA+R   R EG   L+KG  PN  +         VTY+++K+ L
Sbjct:   23 AACFADLLTFPLDTAKVRLQIQGENPGVQSVQYRGVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFASIRIGLYDSVKQFYT---PKGTDHSS---VAIRILAGCTTGAMAVTCAQPTDVVKVRFQAM-------IRLGTGGER---KYRGTMDAYRTIAREEGVRGLWKGTWPNITRNAIVNCAEMVTYDIIKEKL 203          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT2_PONAB (ADP/ATP translocase 2 OS=Pongo abelii GN=SLC25A5 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 53/196 (27.04%), Postives = 84/196 (42.86%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKS--PYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            G  AG  ++   YP+D  R RL     K+     +RG+   L  + + +G + LY+G+  SV G++ Y    F +Y++ K  L   K   +     ++ T                 YP D +RRRM M             GR    + Y G +D +RK  R EG  A +KG   N ++ +   + A V Y+ +K
Sbjct:  120 GGAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHIVISWMIAQTV--------TAVAGLTSYPFDTVRRRMMM-----------QSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGG-AFALVLYDEIK 295          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT1_RAT (ADP/ATP translocase 1 OS=Rattus norvegicus GN=Slc25a4 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 51/196 (26.02%), Postives = 82/196 (41.84%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEK--SPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            G  AG  ++   YP+D  R RL     K  S   + G+   L+ + + +G + LY+G+  SV G++ Y    F VY++ K          L +   + +                  YP D +RRRM M             GR  A + Y G +D +RK  + EG  A +KG   N ++ +   +   V Y+ +K
Sbjct:  120 GGAAGATSLCFVYPLDFARTRLAADVGKGSSQREFNGLGDCLTKIFKSDGLKGLYQGFSVSVQGIIIYRAAYFGVYDTAKGM--------LPDPKNVHIIVSWMIAQSVTAVAGLVSYPFDTVRRRMMM-----------QSGRKGADIMYTGTVDCWRKIAKDEGRKAFFKGAWSNVLRGMGG-AFVLVLYDEIK 295          
The following BLAST results are available for this feature:
BLAST of CX290144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
MCAT_ARATH5.620e-1327.75Mitochondrial carnitine/acylcarnitine carrier-like... [more]
UCP3_HUMAN7.339e-1328.00Mitochondrial uncoupling protein 3 OS=Homo sapiens... [more]
ADT1_RABIT7.339e-1326.53ADP/ATP translocase 1 OS=Oryctolagus cuniculus GN=... [more]
ADT1_MOUSE7.339e-1326.02ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 P... [more]
UCP5_HUMAN9.586e-1326.85Brain mitochondrial carrier protein 1 OS=Homo sapi... [more]
UCP3_MOUSE9.586e-1328.43Mitochondrial uncoupling protein 3 OS=Mus musculus... [more]
ADT1_BOVIN9.586e-1326.53ADP/ATP translocase 1 OS=Bos taurus GN=SLC25A4 PE=... [more]
UCP3_RAT1.252e-1227.41Mitochondrial uncoupling protein 3 OS=Rattus norve... [more]
ADT2_PONAB1.252e-1227.04ADP/ATP translocase 2 OS=Pongo abelii GN=SLC25A5 P... [more]
ADT1_RAT1.252e-1226.02ADP/ATP translocase 1 OS=Rattus norvegicus GN=Slc2... [more]

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Properties
Property NameValue
Genbank descriptionC02021A02SK IF1 Citrus clementina cDNA clone C02021A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290144 ID=CX290144; Name=CX290144; organism=Citrus clementina; type=EST; length=727bp
GGAGCATGTGCTGGAATAATTGCCATGTCTGCCACTTACCCCATGGATAT
GGTACGGGGGAGGCTAACTGTTCAGACAGAAAAGTCTCCATACCGGTACA
GGGGAATCTTCCATGCTCTTTCAACTGTGCTGCGGGAAGAAGGCCCACGG
GCTTTGTACAGGGGCTGGTTTCCTTCAGTAATTGGAGTTGTCCCCTACGT
GGGTCTCAACTTTGCTGTGTATGAATCTTTAAAAGTTTGGTTAATCAAAA
CTAAGCCCCTTGGGTTAGCTGAAGATTCTGAGTTGAGTGTGACGACAAGA
CTAGCGTGTGGAGCTGCTGCAGGAACAGTTGGCCAAACTGTTGCCTACCC
TCTTGATGTTATACGCCGAAGAATGCAGATGGTGGGTTGGAAAGAAGCTT
CCTCTGTGGTCATTGGTGATGGGAGAAACAGAGCTCCTCTTGAATATAAT
GGCATGATTGATGCATTCCGAAAAACTGTCCGGCACGAGGGGTTTGGAGC
ATTATACAAGGGCTTGGTTCCCAATTCTGTGAAGGTTGTTCCATCCATAT
CACTAGCATTTGTGACTTATGAGGTGGTGAAGGACATTTTAGGAGTTGAA
ATTAGAATATCAGACTGAAGTTTGTGGAACTTTGACATTTGTTGGACAGA
GGTGTTATTTTTGTAGGGAAGGGGTTAGGGAAAAGGTAAAGTAGGCATTC
TTGCCTTTTGTCTTTCTAAGGTCAAGT
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