CX290144

Overview
NameCX290144
Unique NameCX290144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 65/203 (32.02%), Postives = 94/203 (46.31%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPR-ALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSE-------LSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFG-ALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            G+ AG+ A+  TYP+DMVR RL  Q  K  + Y GI HA  T+  +EG     YRG  P+++G+ PY G++F  + +LK   +   P  L   S        L     L              YP DV RRRMQ+         V+ +      +      D  +    H G    LY+GL  N ++ +PS ++AF TYE++K
Sbjct:  137 GSMAGMTAVICTYPLDMVRVRLAFQV-KGEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYPFDVTRRRMQL-------GTVLPEFEKCLTMR-----DTMKYVYGHHGIRKGLYRGLSLNYIRCIPSQAVAFTTYELMK 326          

HSP 2 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 57/197 (28.93%), Postives = 88/197 (44.67%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHE-GFGALYKGLVPNSVKVVPSISLAFVTYEVVKDI 588
            G  AG  A +   P+D V+  + +Q     Y++ G+F AL  V ++EG   LY+G    +I + PY  + F  +E  K  LI TK LG++         RL              YPLD++R R+      E S              Y G+I AF+     E GF   Y+GL+P  + + P   ++F T+  +K +
Sbjct:   43 GGIAGCCAKTTVAPLDRVK--VLLQAHNHHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKT-LITTK-LGIS-----GHVHRLMAGSMAGMTAVICTYPLDMVRVRLAFQVKGEHS--------------YTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSV 216          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: S2541_MOUSE (Solute carrier family 25 member 41 OS=Mus musculus GN=Slc25a41 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.994e-18
Identity = 57/206 (27.67%), Postives = 104/206 (50.49%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESL-----KVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVEI 603
            G+ A  ++ +   PM++++ RLT++      +Y+G+      +L  +G RALYRG+ P+++G++PY   + AVYE L     K+      P GL   S ++++T                YPL ++R RMQ     E S+                M   F++ +  +G+  LY+G+ P  +KV+P+  ++++ YE +K  LGV++
Sbjct:  130 GSLAVAVSQTLINPMEVLKTRLTLRFTG---QYKGLLDCARQILERDGTRALYRGYLPNMLGIIPYACTDLAVYELLQCLWQKLGRDMKDPSGLVSLSSVTLST---------TCGQMASYPLTLVRTRMQAQDTVEGSNPT--------------MQGVFKRILSQQGWPGLYRGMTPTLLKVLPAGGISYLVYEAMKKTLGVQV 309          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: S2543_HUMAN (Solute carrier family 25 member 43 OS=Homo sapiens GN=SLC25A43 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 58/197 (29.44%), Postives = 97/197 (49.24%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESL-KVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDI 588
            G+ AG+++   TYP D+++ RL +Q    P  YRG+ HA ST+ ++EG  ALYRG   +V+G +P+   +  VY +L K+W             + S+                  +P + ++R+MQ      A S  +        + ++G +D FR+ V+ +G   L+ GL  N +K+VP   + F T+E  K I
Sbjct:  113 GSLAGMVSTIVTYPTDLIKTRLIMQNILEP-SYRGLLHAFSTIYQQEGFLALYRGVSLTVVGALPFSAGSLLVYMNLEKIW--------NGPRDQFSLPQNFANVCLAAAVTQTLSFPFETVKRKMQ------AQSPYLPHS-GGVDVHFSGAVDCFRQIVKAQGVLGLWNGLTANLLKIVPYFGIMFSTFEFCKRI 293          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: GDC_BOVIN (Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 65/203 (32.02%), Postives = 94/203 (46.31%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGP-RALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSE-------LSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFG-ALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            G+ AG+ A+  TYP+DMVR RL  Q  K  + Y GI HA  T+  +EG     YRG  P+++G+ PY G++F  + +LK   +   P  L   S        L     L              YP DV RRRMQ+         V+ +      +      +  +    H G    LY+GL  N ++ VPS ++AF TYE++K
Sbjct:  135 GSMAGMTAVICTYPLDMVRVRLAFQV-KGEHTYTGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSYAPTLLGRPSSDNPNVLVLKTHINLLCGGVAGAIAQTISYPFDVTRRRMQL-------GAVLPEFEKCLTMR-----ETMKYVYGHHGIRKGLYRGLSLNYIRCVPSQAVAFTTYELMK 324          

HSP 2 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 55/197 (27.92%), Postives = 87/197 (44.16%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHE-GFGALYKGLVPNSVKVVPSISLAFVTYEVVKDI 588
            G  AG  A +   P+D V+  + +Q     YR+ G+F  L  V ++EG   LY+G    +I + PY  + F  +E  K  LI TK LG++         RL              YPLD++R R+                + +    Y G+I AF+     E GF   Y+GL+P  + + P   ++F T+  +K +
Sbjct:   41 GGIAGCCAKTTVAPLDRVK--VLLQAHNHHYRHLGVFSTLRAVPKKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKT-LITTK-LGVS-----GHVHRLMAGSMAGMTAVICTYPLDMVRVRLAF--------------QVKGEHTYTGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSV 214          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: TPC1_MAGGR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Magnaporthe grisea GN=TPC1 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 60/194 (30.93%), Postives = 95/194 (48.97%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTK-PLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVV 579
            GA AG+ + + TYP+D++R R   Q       Y+ +  A++ + R+EG R  +RG  P+V    P++G+ FA YESL+  L   K P    + +  S+T                 +PLD++RRR+Q+ G   +  V      ++   EY G         R EGF  LY+GL  + +K  P+ ++   TYE V
Sbjct:  135 GAAAGVTSTTVTYPLDLLRTRFAAQGSGDDRVYQSLRRAVADIWRDEGYRGFFRGIGPAVGQTFPFMGIFFAAYESLRAPLADLKLPFWGGQLALASMTA--------STLAKTAVFPLDLVRRRIQVQGPTRSKYV------HKNIPEYKGTFSTISTIARTEGFRGLYRGLTVSLIKSAPASAVTMWTYERV 314          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: TPC1_NEOFI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 61/194 (31.44%), Postives = 98/194 (50.52%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQ-TEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWL--IKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYE 573
            GA AG +A ++TYP+D++R R   Q TE+    Y  +  ++  + R EGP   +RG   +V  +VPY+GL FA YESL+  L  ++  P G  + +   + + L              +PLD++R+R+Q+ G      V      +R   EY G+       VR +G   LY+GL  + +K  P+ ++   TYE
Sbjct:  129 GAVAGGLATASTYPLDLLRTRFAAQGTERI---YTSLLASVQDIARNEGPAGFFRGCSAAVGQIVPYMGLFFATYESLRPVLSGLENMPFGSGDAAAGVIASVL---------AKTGVFPLDLVRKRLQVQGPTRTLYV------HRNIPEYRGVFSTIAMIVRTQGVRGLYRGLTVSLIKAAPASAITMWTYE 304          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: TPC_BOVIN (Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 59/195 (30.26%), Postives = 95/195 (48.72%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLK---VWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEV 576
            G  +  +A  A +P+D++R R   Q E  P  Y+ +  A+ T+ R EGP   Y+G  P++I + PY G  F++Y SLK    W +       AE  +      L              YPLD+ ++R+Q+ G+++A +   G  R+     Y G++D   + +R EG    +KGL P+ +K   S  L F  YE+
Sbjct:  125 GGLSACVATLAVHPVDVLRTRFAAQGE--PRVYKTLRDAVVTMYRTEGPLVFYKGLNPTLIAIFPYAGFQFSIYSSLKRAYEWALP------AEGKKNGNFKNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEQARA-SFGQVRS-----YKGLLDCAGQVLREEGAQGCFKGLSPSLLKAALSTGLVFFWYEL 305          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: TPC1_ASPFU (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus fumigatus GN=tpc1 PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 61/194 (31.44%), Postives = 98/194 (50.52%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQ-TEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWL--IKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYE 573
            GA AG +A ++TYP+D++R R   Q TE+    Y  +  ++  + R EGP   +RG   +V  +VPY+GL FA YESL+  L  ++  P G  + +   + + L              +PLD++R+R+Q+ G      V      +R   EY G+       VR +G   LY+GL  + +K  P+ ++   TYE
Sbjct:  129 GAVAGGLATASTYPLDLLRTRFAAQGTERI---YTSLLASVRDIARSEGPAGFFRGCSAAVGQIVPYMGLFFATYESLRPVLSGLENMPFGSGDAAAGVIASVL---------AKSGVFPLDLVRKRLQVQGPTRTLYV------HRNIPEYRGVFSTIAMIVRTQGVRGLYRGLTVSLIKAAPASAITMWTYE 304          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: YBT5_SCHPO (Uncharacterized mitochondrial carrier C12D12.05c OS=Schizosaccharomyces pombe GN=SPBC12D12.05c PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 59/204 (28.92%), Postives = 96/204 (47.06%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVL-REEGPRALYRGWFPSVIGVVPYVGLNFAVYESLK---VWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVE 600
            G  AG +A    YP+D ++ R+           + I  + +  L +  G R  YRG    ++G+ PY   +   +E LK   + ++ ++     +D +L     +              +PL+VIR R+Q              G +  P  Y+G ID F KT ++EGF  LYKGL PN +KV PS++++++ YE  K  LG+E
Sbjct:  235 GGMAGSVAQMFIYPVDTLKFRIQCSDLSRGQHGKSIILSNAKELYKSVGIRGYYRGVLVGILGMFPYSATDLGTFEGLKRTWIGILASRDNVDPQDVKLPNGLVMAFGALSGSTGATIVFPLNVIRTRLQT------------QGTSAHPATYDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKKWLGLE 426          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: S2545_MOUSE (Solute carrier family 25 member 45 OS=Mus musculus GN=Slc25a45 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 64/197 (32.49%), Postives = 89/197 (45.18%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTE------KSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYE 573
            G   G++      P D+++ RL  QTE       S  RYRG  H  +++LREEGP+ L+RG +  V+   P +G+ F  YE L     +  P    E    S  T L               P DVI+ RMQM G K         GR     +Y GM+D    + R EG G  +KG+  NS +  P  +  F++YE
Sbjct:  106 GCTGGLLQAYCLAPFDLIKVRLQNQTEPRMQISSSMPRYRGPVHCAASILREEGPQGLFRGSWALVLRDTPTLGMYFVTYEGL---CRQYTP----EGQNPSSATVLVAGGFAGIASWITATPFDVIKSRMQMDGLK---------GR-----KYGGMLDCMASSFRQEGIGVFFKGMTLNSARAFPVNAATFLSYE 281          
The following BLAST results are available for this feature:
BLAST of CX290144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
GDC_HUMAN1.527e-1832.02Graves disease carrier protein OS=Homo sapiens GN=... [more]
S2541_MOUSE1.994e-1827.67Solute carrier family 25 member 41 OS=Mus musculus... [more]
S2543_HUMAN2.604e-1829.44Solute carrier family 25 member 43 OS=Homo sapiens... [more]
GDC_BOVIN3.401e-1832.02Graves disease carrier protein OS=Bos taurus GN=SL... [more]
TPC1_MAGGR4.442e-1830.93Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_NEOFI5.802e-1831.44Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC_BOVIN7.577e-1830.26Mitochondrial thiamine pyrophosphate carrier OS=Bo... [more]
TPC1_ASPFU7.577e-1831.44Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
YBT5_SCHPO1.293e-1728.92Uncharacterized mitochondrial carrier C12D12.05c O... [more]
S2545_MOUSE1.688e-1732.49Solute carrier family 25 member 45 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC02021A02SK IF1 Citrus clementina cDNA clone C02021A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290144 ID=CX290144; Name=CX290144; organism=Citrus clementina; type=EST; length=727bp
GGAGCATGTGCTGGAATAATTGCCATGTCTGCCACTTACCCCATGGATAT
GGTACGGGGGAGGCTAACTGTTCAGACAGAAAAGTCTCCATACCGGTACA
GGGGAATCTTCCATGCTCTTTCAACTGTGCTGCGGGAAGAAGGCCCACGG
GCTTTGTACAGGGGCTGGTTTCCTTCAGTAATTGGAGTTGTCCCCTACGT
GGGTCTCAACTTTGCTGTGTATGAATCTTTAAAAGTTTGGTTAATCAAAA
CTAAGCCCCTTGGGTTAGCTGAAGATTCTGAGTTGAGTGTGACGACAAGA
CTAGCGTGTGGAGCTGCTGCAGGAACAGTTGGCCAAACTGTTGCCTACCC
TCTTGATGTTATACGCCGAAGAATGCAGATGGTGGGTTGGAAAGAAGCTT
CCTCTGTGGTCATTGGTGATGGGAGAAACAGAGCTCCTCTTGAATATAAT
GGCATGATTGATGCATTCCGAAAAACTGTCCGGCACGAGGGGTTTGGAGC
ATTATACAAGGGCTTGGTTCCCAATTCTGTGAAGGTTGTTCCATCCATAT
CACTAGCATTTGTGACTTATGAGGTGGTGAAGGACATTTTAGGAGTTGAA
ATTAGAATATCAGACTGAAGTTTGTGGAACTTTGACATTTGTTGGACAGA
GGTGTTATTTTTGTAGGGAAGGGGTTAGGGAAAAGGTAAAGTAGGCATTC
TTGCCTTTTGTCTTTCTAAGGTCAAGT
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