CX290144

Overview
NameCX290144
Unique NameCX290144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: TPC1_COCIM (Mitochondrial thiamine pyrophosphate carrier 1 OS=Coccidioides immitis GN=TPC1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 61/198 (30.81%), Postives = 95/198 (47.98%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTK-PLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            GA AG I    TYP D++R R   Q     Y    +  A+ ++   EG R  +RG   +V  +VPY+GL FA YES++V +     P G + D+   V   +              +PLD++R+R+Q+ G   +  +         P EYNG++   +  +R  G   LY+GL  + +K  P+ ++   TYE V  IL
Sbjct:  130 GATAGGIGTFTTYPFDLLRTRFAAQGNDKIYP--SLLTAIRSIHAHEGSRGFFRGVSAAVAQIVPYMGLFFATYESVRVPISSLHLPFG-SGDATAGVIASV--------IAKTGVFPLDLVRKRLQVQGPTRSRYI-----HQNIP-EYNGVLSTMKMVLRDGGVRGLYRGLTVSLIKAAPASAVTMWTYERVLKIL 310          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: S2545_HUMAN (Solute carrier family 25 member 45 OS=Homo sapiens GN=SLC25A45 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 61/197 (30.96%), Postives = 87/197 (44.16%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTE------KSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYE 573
            G   G +      P D+++ RL  QTE        P RY+G  H  +++ REEGPR L+RG +   +   P VG+ F  YE L     +  P    E    S  T L               PLD+I+ RMQM            DG  R    Y GM+D    ++R EG G  ++G+  NS +  P  ++ F++YE
Sbjct:  106 GCTGGFLQAYCLAPFDLIKVRLQNQTEPRAQPGSPPPRYQGPVHCAASIFREEGPRGLFRGAWALTLRDTPTVGIYFITYEGL---CRQYTP----EGQNPSSATVLVAGGFAGIASWVAATPLDMIKSRMQM------------DGLRRR--VYQGMLDCMVSSIRQEGLGVFFRGVTINSARAFPVNAVTFLSYE 281          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT3_YEAST (ADP,ATP carrier protein 3 OS=Saccharomyces cerevisiae GN=AAC3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 56/184 (30.43%), Postives = 82/184 (44.57%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPY----RYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVV 540
            G  AG +++   Y +D  R RL    + S      ++ G+       L+ +G   LYRG+ PSV+G+V Y GL F +++SL       KPL L    + S                   YPLD +RRRM M   +               ++YNG ID  +K V  EG G+L+KG   N ++ V
Sbjct:  123 GGAAGALSLLFVYSLDFARTRLAADAKSSKKGGARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSL-------KPLVLTGSLDGSFLASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQ--------------AVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSV 285          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: MCFW_DICDI (Mitochondrial substrate carrier family protein W OS=Dictyostelium discoideum GN=mcfW PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 65/199 (32.66%), Postives = 102/199 (51.26%), Query Frame = 1
Query:   10 AGIIAMSATYPMDMVRGR-LTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLI---KTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNG-MIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            AG      T P+ +++ R +T +      +YRGI H++ ++  EEG R LY+G  PS++GV+ +VG+ F +YE  K  L    K K LG+ E    S  +++              YP +V+R R Q     ++S     D  NR    Y G +I  F++ VR EG+  LY+G+  N ++V PS  + F +YE +K  L
Sbjct:  145 AGAATSICTSPIWLIKTRFITQEMVGRQKKYRGIVHSMVSIYHEEGFRGLYKGLGPSLLGVL-HVGVQFPLYEKFKSILKEKNKNKELGIVEIMIASSVSKIIASVVA--------YPHEVLRARSQ-----DSSP----DSPNRT---YRGNIIQMFKQIVREEGWRGLYRGMGVNLLRVTPSCVITFTSYEYIKKFL 322          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: TPC1_SCLS1 (Mitochondrial thiamine pyrophosphate carrier 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 60/198 (30.30%), Postives = 98/198 (49.49%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWL-IKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            GA AG +A +ATYP+D++R R   Q  +  Y    +  ++  +   EGPR  ++G    V  ++PY+G+ FA YE+L+V L     P G + D+   V   +              +P D+IR+R+Q+ G      V         P+ YNG+    R  +++EG+  LY+GL  +  K  P+ ++   TYE V  +L
Sbjct:  131 GASAGAVATTATYPLDLLRTRFAAQGVERIYT--SLRASIRDIAVNEGPRGFFQGLGAGVGQIIPYMGIFFATYETLRVPLGTLHMPFG-SGDATAGVLASV--------IAKTGIFPFDLIRKRLQVQGPTRERYV-----HKNIPV-YNGVFRTMRHIIQNEGYRGLYRGLTVSLFKAAPASAVTMWTYERVLRLL 311          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: TPC1_NEUCR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Neurospora crassa GN=tpc-1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 60/191 (31.41%), Postives = 89/191 (46.60%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYE 573
            GA AG +A + TYP+D++R R   Q  +  Y    +  AL T+   EG    +RG  P +  ++PY+G  F VYE+L+  L K   L L   S  +V   L              +PLD++R+R+Q+ G      V         P+   GM+      VR EG   LY+GL  +  K  P+ ++   TYE
Sbjct:  138 GASAGGVATAVTYPLDLLRTRFAAQGVERVYP--SLVQALKTIYASEGVTGYFRGLGPGLAQIIPYMGTFFCVYETLRPRLSK---LELPYSSGSAVAGVL-----ASVMAKTGTFPLDLVRKRIQVQGPTRGMYV-----HKNIPVYDGGMVKTVATIVRREGVRGLYRGLTVSLFKAAPASAVTMWTYE 313          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: TPC1_EMENI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Emericella nidulans GN=tpc1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 59/194 (30.41%), Postives = 92/194 (47.42%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLI---KTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYE 573
            GA  G IA +ATYP+D++R R   Q       Y  +F +L  + + EG    +RG   +V  +VPY+GL FA YE+L+  +    +  P+ L   S  +                   +PLD++R+R+Q+ G   A  V      +R   EY G+ +      R +G   LY+GL  + VK  P+ ++   TYE
Sbjct:  129 GALGGGIATAATYPLDLLRTRFAAQGSGDNRVYESLFASLRDIAKTEGTVGFFRGCSAAVGQIVPYMGLFFATYEALRPVMATAPELSPIPLPPGSGDAAA-----GIVASVLAKTGVFPLDLVRKRLQVQGPTRALYV------HRNIPEYRGVFNTMGLIFRTQGLRGLYRGLTVSLVKAAPASAVTMWTYE 311          

HSP 2 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 55/215 (25.58%), Postives = 89/215 (41.40%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEK-----------SPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVEIRIS 612
            G  AG+I+     P+D+V+ RL +Q               P  Y+G    + T+LREEG   L++G  P+ +  V Y G+ F  Y +    L +  P  L +  E  ++  L              YPLD++R R              G G NR    Y  +  + R   + EG    ++G      ++VP + L F TYE ++ ++     +S
Sbjct:   21 GGIAGLISRFCIAPLDVVKIRLQLQIHSLSDPTSHAHITGPV-YKGTLSTIKTILREEGLTGLWKGNIPAELLYVCYGGIQFTTYRTTTQLLAQLDPHRLPQPIESFISGAL-----GGGIATAATYPLDLLRTRF----------AAQGSGDNRV---YESLFASLRDIAKTEGTVGFFRGCSAAVGQIVPYMGLFFATYEALRPVMATAPELS 216          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: MCFE_DICDI (Mitochondrial substrate carrier family protein E OS=Dictyostelium discoideum GN=mcfE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 58/186 (31.18%), Postives = 88/186 (47.31%), Query Frame = 1
Query:   40 PMDMVRGRLTVQTEKSPYR-----YRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            PMD+++ RL VQT           Y+G FHA   +L+EEG R LYRG+ P++    P+VG+ F+VYE  K  +  +  L   +D  L +  +L               PLDVI+ R+Q+              R+     Y GM D+F+  ++ EG  A  KG+      + P  +L   +YE +K
Sbjct:  126 PMDIIKQRLQVQTNTQKLNPNQTYYKGSFHAGKIILQEEGIRGLYRGFMPALATYGPFVGIYFSVYEKCKSTI--SSLLSKEKDQYLPIPYQLGSGFFAGAFAAAVTCPLDVIKTRIQV-------------QRSTEKQIYKGMWDSFKTILKEEGPKAFVKGMGARIWWIAPGNALTIASYEQLK 296          

HSP 2 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 55/198 (27.78%), Postives = 88/198 (44.44%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEK-SPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            GA +G++A S  +P+D VR R  VQ EK    +Y+G F+AL+ +++ EG   LY+G+       VP   L F  YE  K W+         E    S  T                 P+D+I++R+Q+    + ++  +    N     Y G   A +  ++ EG   LY+G +P      P + + F  YE  K  +
Sbjct:   15 GATSGLLADSIMHPVDTVRAR--VQIEKVGKSQYKGTFNALNQIIKNEGVSYLYKGFPIVATATVPAHALYFLGYEYSKQWVTDRYGKKWGE----STITHFSAGFVADALGSLIWVPMDIIKQRLQV----QTNTQKL----NPNQTYYKGSFHAGKIILQEEGIRGLYRGFMPALATYGPFVGIYFSVYEKCKSTI 198          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: MCFA_DICDI (Mitochondrial substrate carrier family protein A OS=Dictyostelium discoideum GN=mcfA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 56/200 (28.00%), Postives = 100/200 (50.00%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKV----WLIKTKPLGL-----AEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYE 573
            GA +G+++++ T+P+D+++  +TV    +      I +    + R+ G    +RG    ++ + P+  LNF  YE++K     +++K+ PL       A    L++T                 YPLDV++RR+ +  +           RN+ P+ Y   IDA  K  + EG  ALYKG+ P  +KV+P++S+ F+ YE
Sbjct:  149 GASSGVVSVALTHPLDVIKTHITVIAPTAAT----IKNVTKGIYRDLGIIGFFRGLSAGILNIAPFAALNFTFYETIKEKTQQYILKSPPLYAPSIYGAISGGLTMTI---------------LYPLDVVKRRIMLQHFD----------RNQLPI-YKNFIDAIIKITKTEGISALYKGIRPAYLKVIPTVSINFLIYE 318          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: MCFC_DICDI (Mitochondrial substrate carrier family protein C OS=Dictyostelium discoideum GN=mcfC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 57/203 (28.08%), Postives = 94/203 (46.31%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTV-LREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVEIR 606
            G+ AG+++ +  +P+++VR RL+ +   +   Y GIF     + + E+  R  YRG   S+   +P+ G+N  VYE LK  +IK          +L V                  YP  V++ R+            I  G +    +Y G+ D   K ++ EG   LYKG+VP+ +K +PS S+ F+ YE  K    V ++
Sbjct:  285 GSVAGVVSHTTLFPLEVVRLRLSAEIAGT---YNGIFDCFKKIAISEKSIRPFYRGLGASITATIPHSGVNMMVYEFLKHKVIKMTGNEFPTAGQLLVCASTSSVCGQLVG-----YPFHVVKSRL------------ITQGSSVNQEKYTGLFDGLTKIIKKEGPIGLYKGIVPSFMKSIPSHSITFIVYEGFKKAFDVNLK 467          
The following BLAST results are available for this feature:
BLAST of CX290144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
TPC1_COCIM1.866e-1630.81Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2545_HUMAN1.866e-1630.96Solute carrier family 25 member 45 OS=Homo sapiens... [more]
ADT3_YEAST1.866e-1630.43ADP,ATP carrier protein 3 OS=Saccharomyces cerevis... [more]
MCFW_DICDI2.438e-1632.66Mitochondrial substrate carrier family protein W O... [more]
TPC1_SCLS13.184e-1630.30Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_NEUCR3.184e-1631.41Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_EMENI3.184e-1630.41Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
MCFE_DICDI4.158e-1631.18Mitochondrial substrate carrier family protein E O... [more]
MCFA_DICDI4.158e-1628.00Mitochondrial substrate carrier family protein A O... [more]
MCFC_DICDI5.430e-1628.08Mitochondrial substrate carrier family protein C O... [more]

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Properties
Property NameValue
Genbank descriptionC02021A02SK IF1 Citrus clementina cDNA clone C02021A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290144 ID=CX290144; Name=CX290144; organism=Citrus clementina; type=EST; length=727bp
GGAGCATGTGCTGGAATAATTGCCATGTCTGCCACTTACCCCATGGATAT
GGTACGGGGGAGGCTAACTGTTCAGACAGAAAAGTCTCCATACCGGTACA
GGGGAATCTTCCATGCTCTTTCAACTGTGCTGCGGGAAGAAGGCCCACGG
GCTTTGTACAGGGGCTGGTTTCCTTCAGTAATTGGAGTTGTCCCCTACGT
GGGTCTCAACTTTGCTGTGTATGAATCTTTAAAAGTTTGGTTAATCAAAA
CTAAGCCCCTTGGGTTAGCTGAAGATTCTGAGTTGAGTGTGACGACAAGA
CTAGCGTGTGGAGCTGCTGCAGGAACAGTTGGCCAAACTGTTGCCTACCC
TCTTGATGTTATACGCCGAAGAATGCAGATGGTGGGTTGGAAAGAAGCTT
CCTCTGTGGTCATTGGTGATGGGAGAAACAGAGCTCCTCTTGAATATAAT
GGCATGATTGATGCATTCCGAAAAACTGTCCGGCACGAGGGGTTTGGAGC
ATTATACAAGGGCTTGGTTCCCAATTCTGTGAAGGTTGTTCCATCCATAT
CACTAGCATTTGTGACTTATGAGGTGGTGAAGGACATTTTAGGAGTTGAA
ATTAGAATATCAGACTGAAGTTTGTGGAACTTTGACATTTGTTGGACAGA
GGTGTTATTTTTGTAGGGAAGGGGTTAGGGAAAAGGTAAAGTAGGCATTC
TTGCCTTTTGTCTTTCTAAGGTCAAGT
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