CX290144

Overview
NameCX290144
Unique NameCX290144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig237 contig Ccv1_Contig237:15..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT4_MOUSE (ADP/ATP translocase 4 OS=Mus musculus GN=Slc25a31 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 54/203 (26.60%), Postives = 85/203 (41.87%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPYR--YRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVEI 603
            G  AG  ++   YP+D  R RL V   K P +  + G+   +  + + +G   LY+G+  SV G++ Y    F  Y+++K  L K K        E                     YP D +RRRM M                 +  +Y G ID F K  RHEG  A ++G   N ++     +L  V Y+ +K+ L +++
Sbjct:  133 GGAAGATSLCVVYPLDFARTRLGVDIGKGPEQRQFTGLGDCIMKIAKSDGLIGLYQGFGVSVQGIIVYRASYFGAYDTVKGLLPKPK--------ETPFLVSFIIAQIVTTCSGILSYPFDTVRRRMMMQS-------------GESDRQYKGTIDCFLKIYRHEGVPAFFRGAFSNILRGTGG-ALVLVLYDKIKEFLNIDV 313          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: S2536_HUMAN (Solute carrier family 25 member 36 OS=Homo sapiens GN=SLC25A36 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 54/202 (26.73%), Postives = 90/202 (44.55%), Query Frame = 1
Query:    4 ACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTR------LXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            A AG  A++AT P+ +++ RL +       R  G F  +  V + +G +  YRG   S  G+   V ++F +YES+K  L++ K     E+ E SV         +              YP +V+R R++  G K                 Y          V+ EG+G+LY+GL  + V+ +P+ ++   TYE+V  +L
Sbjct:  126 AMAGFTAITATNPIWLIKTRLQLDARNRGERRMGAFECVRKVYQTDGLKGFYRGMSASYAGISETV-IHFVIYESIKQKLLEYKTASTMENDEESVKEASDFVGMMLAAATSKTCATTIAYPHEVVRTRLREEGTK-----------------YRSFFQTLSLLVQEEGYGSLYRGLTTHLVRQIPNTAIMMATYELVVYLL 309          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT3_HUMAN (ADP/ATP translocase 3 OS=Homo sapiens GN=SLC25A6 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 56/199 (28.14%), Postives = 86/199 (43.22%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKS--PYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            G  AG  ++   YP+D  R RL     KS     +RG+   L  + + +G R LY+G+  SV G++ Y    F VY++ K  L   K   +     ++ T                 YP D +RRRM M             GR  A + Y G +D +RK  R EG  A +KG   N ++ +   +   V Y+ +K ++
Sbjct:  120 GGAAGATSLCFVYPLDFARTRLAADVGKSGTEREFRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTV--------TAVAGVVSYPFDTVRRRMMM-----------QSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGG-AFVLVLYDELKKVI 298          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: UCP2_CANFA (Mitochondrial uncoupling protein 2 OS=Canis familiaris GN=UCP2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 56/201 (27.86%), Postives = 87/201 (43.28%), Query Frame = 1
Query:   10 AGIIAMSATYPMDMVRGRLTVQTEKS-PYR------YRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            A  IA   T+P+D  + RL +Q E+  P R      YRG+   + T++R EGPR+LY G    +   + +  +   +Y+S+K +  K             + +RL               P DV++ R Q       +    G GR      Y   +DA++   R EGF  L+KG  PN  +         VTY+++KD L
Sbjct:   23 AACIADLITFPLDTAKVRLQIQGERQGPVRAAASAQYRGVLCTILTMVRTEGPRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFYTKGS-------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQ-------AQARAGSGRR-----YQSTVDAYKTIAREEGFRGLWKGTSPNVARNAIVNCAELVTYDLIKDAL 204          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: TPC1_YARLI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Yarrowia lipolytica GN=TPC1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 60/205 (29.27%), Postives = 89/205 (43.41%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKS--PYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVY----ESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIG--DGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            GA AG  A  ATYP D+ R     Q  K+     Y  +F     + + EGP   +RG   S+I + PY+GL FA Y    +SL  +  K   L ++ +                       +PLD IR+R+Q  G  + S   +    G  R    YN  + A R+ +  EG   LYKG + + +K  P+ ++   T+E    IL
Sbjct:  121 GATAGAGATIATYPFDLFRTLFAAQGAKNCNVKNYTSLFQTFKLIYKTEGPLGFFRGVSSSIISIAPYMGLFFASYGRVKDSLDAFSNKHHDLLVSYNLPTKGWQEATAGLCAGTASKALVFPLDTIRKRLQTQGRMDVSYKELSGKPGVQRLLDSYNPFVMA-RRIIVAEGCRGLYKGFLVSLIKSAPTSAITMYTFEKSLSIL 324          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT4_MACFA (ADP/ATP translocase 4 OS=Macaca fascicularis GN=SLC25A31 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 55/205 (26.83%), Postives = 90/205 (43.90%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPY--RYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTK--PLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVEI 603
            G  AG  ++   YP+D  R RL V   K P   +++G+   +  + + +G   LY+G+  SV G++ Y    F  Y+++K  L K K  P  ++      VTT                YP D +RRRM M                 A  +Y G +D F K  +HEG  + ++G   N ++     +L  V Y+ +K+   ++I
Sbjct:  132 GGAAGATSLCVVYPLDFARTRLGVDIGKGPEERQFKGLGDCIMKIAKSDGIAGLYQGFGVSVQGIIVYRASYFGAYDTVKGLLPKPKKTPFLVSFFIAQVVTT----------CSGILSYPFDTVRRRMMMQS-------------GEAKRQYKGTLDCFVKIYQHEGINSFFRGAFSNVLRGTGG-ALVLVLYDKIKEFFHIDI 312          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: ADT4_HUMAN (ADP/ATP translocase 4 OS=Homo sapiens GN=SLC25A31 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 55/205 (26.83%), Postives = 90/205 (43.90%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQTEKSPY--RYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTK--PLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVEI 603
            G  AG  ++   YP+D  R RL V   K P   +++G+   +  + + +G   LY+G+  SV G++ Y    F  Y+++K  L K K  P  ++      VTT                YP D +RRRM M                 A  +Y G +D F K  +HEG  + ++G   N ++     +L  V Y+ +K+   ++I
Sbjct:  132 GGAAGATSLCVVYPLDFARTRLGVDIGKGPEERQFKGLGDCIMKIAKSDGIAGLYQGFGVSVQGIIVYRASYFGAYDTVKGLLPKPKKTPFLVSFFIAQVVTT----------CSGILSYPFDTVRRRMMMQS-------------GEAKRQYKGTLDCFVKIYQHEGISSFFRGAFSNVLRGTGG-ALVLVLYDKIKEFFHIDI 312          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: UCP4_HUMAN (Mitochondrial uncoupling protein 4 OS=Homo sapiens GN=SLC25A27 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 54/203 (26.60%), Postives = 94/203 (46.31%), Query Frame = 1
Query:    1 GACAGIIAMSATYPMDMVRGRLTVQ----TEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGV 597
            G  AG+I      P D+V+ ++ ++     E  P R+RG+ HA + +L E G R L+ GW P++         +   Y+++K +L+   PL      E ++ T                 P DVI+ R+      +        GR    L Y    D   + V+ EGF +LYKG +P+ +++ P   + ++TYE ++++ GV
Sbjct:  134 GMMAGVIGQFLANPTDLVKVQMQMEGKRKLEGKPLRFRGVHHAFAKILAEGGIRGLWAGWVPNIQRAALVNMGDLTTYDTVKHYLVLNTPL------EDNIMTHGLSSLCSGLVASILGTPADVIKSRIMNQPRDK-------QGRG---LLYKSSTDCLIQAVQGEGFMSLYKGFLPSWLRMTPWSMVFWLTYEKIREMSGV 320          

HSP 2 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 54/213 (25.35%), Postives = 87/213 (40.85%), Query Frame = 1
Query:    7 CAGIIAMSATYPMDMVRGRLTVQTEKSPYR----------YRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVEIRISD 615
            CA  +A  AT+P+D+ + RL +Q E +  R          YRG+      ++ EEG   L++G  P++   V Y G     YE L+  +      G +ED    +   +               P D+++ +MQM G ++             PL + G+  AF K +   G   L+ G VPN  +          TY+ VK  L +   + D
Sbjct:   28 CAATVAELATFPLDLTKTRLQMQGEAALARLGDGARESAPYRGMVRTALGIIEEEGFLKLWQGVTPAIYRHVVYSGGRMVTYEHLREVV-----FGKSEDEHYPLWKSVIGGMMAGVIGQFLANPTDLVKVQMQMEGKRKLEG---------KPLRFRGVHHAFAKILAEGGIRGLWAGWVPNIQRAALVNMGDLTTYDTVKHYLVLNTPLED 226          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: UCP2_HUMAN (Mitochondrial uncoupling protein 2 OS=Homo sapiens GN=UCP2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 56/201 (27.86%), Postives = 88/201 (43.78%), Query Frame = 1
Query:   10 AGIIAMSATYPMDMVRGRLTVQTE-KSPYR------YRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 591
            A  IA   T+P+D  + RL +Q E + P R      YRG+   + T++R EGPR+LY G    +   + +  +   +Y+S+K +  K            S+ +RL               P DV++ R Q       +    G GR      Y   ++A++   R EGF  L+KG  PN  +         VTY+++KD L
Sbjct:   23 AACIADLITFPLDTAKVRLQIQGESQGPVRATASAQYRGVMGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK-------GSEHASIGSRLLAGSTTGALAVAVAQPTDVVKVRFQ-------AQARAGGGR-----RYQSTVNAYKTIAREEGFRGLWKGTSPNVARNAIVNCAELVTYDLIKDAL 204          
BLAST of CX290144 vs. ExPASy Swiss-Prot
Match: MCFM_DICDI (Mitochondrial substrate carrier family protein M OS=Dictyostelium discoideum GN=mcfM PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 53/189 (28.04%), Postives = 89/189 (47.09%), Query Frame = 1
Query:   34 TYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKT--KPLGLAEDSELSVTTRLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLE----YNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVK 582
            T P+ +++ R+ +QT  S   Y GIF  +   ++ EG + LY+G  PS + +  + G+  + YE +K +      K L     SE+ + + +              YP  V++ R+Q             D RN         YNG  D   K +++EG    Y+GLVPN++KV+P+ S+  + YE +K
Sbjct:  128 TNPIFLIKTRMQLQTPGSANYYTGIFDGIKKTVKVEGFKGLYKGVIPS-LWLTFHGGIQMSSYEHIKFYFSSNSGKSLDSLNASEIFIASSISKFLASTIL-----YPFQVVKTRLQ-------------DERNIPNQNNVRVYNGTKDVIFKILKNEGIIGFYRGLVPNTLKVIPNTSITLLLYEEIK 297          
The following BLAST results are available for this feature:
BLAST of CX290144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
ADT4_MOUSE2.980e-1426.60ADP/ATP translocase 4 OS=Mus musculus GN=Slc25a31 ... [more]
S2536_HUMAN6.638e-1426.73Solute carrier family 25 member 36 OS=Homo sapiens... [more]
ADT3_HUMAN6.638e-1428.14ADP/ATP translocase 3 OS=Homo sapiens GN=SLC25A6 P... [more]
UCP2_CANFA1.132e-1327.86Mitochondrial uncoupling protein 2 OS=Canis famili... [more]
TPC1_YARLI1.132e-1329.27Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
ADT4_MACFA1.132e-1326.83ADP/ATP translocase 4 OS=Macaca fascicularis GN=SL... [more]
ADT4_HUMAN1.132e-1326.83ADP/ATP translocase 4 OS=Homo sapiens GN=SLC25A31 ... [more]
UCP4_HUMAN1.479e-1326.60Mitochondrial uncoupling protein 4 OS=Homo sapiens... [more]
UCP2_HUMAN1.479e-1327.86Mitochondrial uncoupling protein 2 OS=Homo sapiens... [more]
MCFM_DICDI1.479e-1328.04Mitochondrial substrate carrier family protein M O... [more]

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Properties
Property NameValue
Genbank descriptionC02021A02SK IF1 Citrus clementina cDNA clone C02021A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290144 ID=CX290144; Name=CX290144; organism=Citrus clementina; type=EST; length=727bp
GGAGCATGTGCTGGAATAATTGCCATGTCTGCCACTTACCCCATGGATAT
GGTACGGGGGAGGCTAACTGTTCAGACAGAAAAGTCTCCATACCGGTACA
GGGGAATCTTCCATGCTCTTTCAACTGTGCTGCGGGAAGAAGGCCCACGG
GCTTTGTACAGGGGCTGGTTTCCTTCAGTAATTGGAGTTGTCCCCTACGT
GGGTCTCAACTTTGCTGTGTATGAATCTTTAAAAGTTTGGTTAATCAAAA
CTAAGCCCCTTGGGTTAGCTGAAGATTCTGAGTTGAGTGTGACGACAAGA
CTAGCGTGTGGAGCTGCTGCAGGAACAGTTGGCCAAACTGTTGCCTACCC
TCTTGATGTTATACGCCGAAGAATGCAGATGGTGGGTTGGAAAGAAGCTT
CCTCTGTGGTCATTGGTGATGGGAGAAACAGAGCTCCTCTTGAATATAAT
GGCATGATTGATGCATTCCGAAAAACTGTCCGGCACGAGGGGTTTGGAGC
ATTATACAAGGGCTTGGTTCCCAATTCTGTGAAGGTTGTTCCATCCATAT
CACTAGCATTTGTGACTTATGAGGTGGTGAAGGACATTTTAGGAGTTGAA
ATTAGAATATCAGACTGAAGTTTGTGGAACTTTGACATTTGTTGGACAGA
GGTGTTATTTTTGTAGGGAAGGGGTTAGGGAAAAGGTAAAGTAGGCATTC
TTGCCTTTTGTCTTTCTAAGGTCAAGT
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