CX290149

Overview
NameCX290149
Unique NameCX290149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.716e-14
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   25 SETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 258
            SE HP HLHG+DF+++G G G F  K+D             T  +   GW  +RFVADNPG W  HCH++ H   G+ +
Sbjct:  463 SENHPIHLHGYDFYIVGEGFGNFNPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWLMHCHLDVHIKWGLAM 541          
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC13_ARATH (Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.159e-14
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   25 SETHPWHLHGHDFWVLGRGEGKFTKE-DEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 261
            +E HP HLHG++F+V+G G G F    D             T    P GW A+RFVA+NPGAW  HCHI+ H   G+ +V
Sbjct:  467 TENHPMHLHGYEFYVVGTGVGNFNPNTDTSSFNLIDPPRRNTIGTPPGGWVAIRFVANNPGAWLMHCHIDSHIFWGLAMV 546          
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC2_ORYSJ (Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.372e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   28 ETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 309
            E+HP+HLHG++F+V+GRG G F    +              V  P G WTA+RF ADNPG W  HCH+E   H   G+ +A  VE  G+ P++++
Sbjct:  461 ESHPFHLHGYNFFVVGRGVGNFDPAKDPAKYNLVDPPERNTVGVPAGGWTAIRFRADNPGVWFLHCHLE--VHTSWGLKMAFLVED-GSGPDESV 552          
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC24_ORYSJ (Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC24 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.792e-13
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 1
Query:   28 ETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVV 261
            E+HP HLHG +F+VL +G G + +  +              V  P G W  +RFVADNPG W  HCH + H   G+G+V
Sbjct:  478 ESHPMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAVIRFVADNPGVWFMHCHFDAHLEFGLGMV 556          
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC15_ORYSJ (Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC15 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.341e-13
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   28 ETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 261
            +++P HLHGHD ++L +G G +    DE            T ++   GW A+RFVADNPGAW  HCH E H  +GM  V
Sbjct:  501 DSNPMHLHGHDVFLLAQGIGIYDAARDEGKFNLVNPPRKNTVLVPNLGWAAVRFVADNPGAWLMHCHFEFHLSMGMAAV 579          
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC3_ORYSJ (Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.057e-13
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 1
Query:   28 ETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 279
            E HP H+HG+DF++L  G G F  K+D             T  +   GW  +RFVADNPG W  HCH++   HI  G+ +A  VE
Sbjct:  466 ENHPIHIHGYDFYILAEGFGNFDPKKDAKKFNYVDPPQRNTVAVPTNGWAVIRFVADNPGVWLMHCHLD--VHITWGLAMAFLVE 548          
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC1_ARATH (Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.057e-13
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1
Query:   28 ETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG-VETVGNIPNQAL 309
            E HP H+HGH+F+V+GRG G F  E +                 P G W A+R  ADNPG W  HCH+E H   G    LA+G +   G +P+Q L
Sbjct:  480 ENHPLHVHGHNFFVVGRGFGNFDPEKDPKRYNLVDPPERNTFAVPTGGWAAIRINADNPGVWFIHCHLEQHTSWG----LAMGFIVKDGPLPSQTL 571          
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC7_ARATH (Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.214e-13
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 1
Query:   25 SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 270
            +E+HP HLHG +F VL +G G +    +              +  P G W  +RF A+NPGAW FHCHI+ H   G+G++  +
Sbjct:  465 AESHPMHLHGFNFHVLAQGFGNYDPSRDRSKLNLVDPQSRNTLAVPVGGWAVIRFTANNPGAWIFHCHIDVHLPFGLGMIFVV 547          
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC5_ARATH (Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.214e-13
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 1
Query:   28 ETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 279
            E HP HLHG+DF+++  G G F  K+D             T  +   GW  +RF+ADNPG W  HCH++   HI  G+ +A  VE
Sbjct:  479 ENHPIHLHGYDFYIIAEGFGNFNPKKDTAKFNLEDPPLRNTVGVPVNGWAVIRFIADNPGVWIMHCHLDA--HISWGLAMAFLVE 561          
BLAST of CX290149 vs. ExPASy Swiss-Prot
Match: LAC9_ORYSJ (Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.810e-13
Identity = 35/80 (43.75%), Postives = 41/80 (51.25%), Query Frame = 1
Query:   25 SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 261
            SE HP HLHG  F+V+GRG G F +  +              V  P  GW A+RF ADNPG W  HCH + H   GM  V
Sbjct:  477 SENHPMHLHGFAFYVVGRGNGTFDESRDPATYNLVDPPFQNTVSVPRSGWAAIRFRADNPGVWFMHCHFDRHVVWGMDTV 556          
The following BLAST results are available for this feature:
BLAST of CX290149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LAC12_ARATH4.716e-1441.77Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC13_ARATH6.159e-1443.75Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 S... [more]
LAC2_ORYSJ1.372e-1341.05Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 ... [more]
LAC24_ORYSJ1.792e-1340.51Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC15_ORYSJ2.341e-1343.04Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC3_ORYSJ3.057e-1341.18Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 ... [more]
LAC1_ARATH3.057e-1340.63Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=... [more]
LAC7_ARATH5.214e-1337.35Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=... [more]
LAC5_ARATH5.214e-1340.00Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=... [more]
LAC9_ORYSJ6.810e-1343.75Putative laccase-9 OS=Oryza sativa subsp. japonica... [more]

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Properties
Property NameValue
Genbank descriptionC02021A07SK IF1 Citrus clementina cDNA clone C02021A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290149 ID=CX290149; Name=CX290149; organism=Citrus clementina; type=EST; length=482bp
AATTCGGCACGAGGGCCAAACTTGAGTGAAACCCACCCTTGGCATTTGCA
TGGGCATGATTTTTGGGTATTAGGGCGCGGAGAAGGGAAGTTTACGAAAG
AAGATGAGAAGAAATTTAACTTGAAGAATCCACCATTGAAAAATACTGCG
GTGATATTCCCATATGGCTGGACTGCTTTAAGATTTGTTGCTGATAATCC
AGGTGCTTGGGCATTTCACTGCCATATTGAGCCCCATTTCCATATTGGAA
TGGGTGTGGTTCTTGCTCTTGGTGTTGAAACCGTTGGTAATATTCCAAAC
CAGGCGTTGGCTTGTGGTTTGACTGGGAAAAGGTTCATGAACCCTAAACA
AAATTGAGGCTAGCTAGTTTGTTTTATGTACTTTATTCCTGGAGTTTCTA
TTGTTGTTTTGATATTTATATTAATAAAATTTCGGAGTTGAATAAAAAAA
AAAAAAAAAAAAACCTCGGGGGGGGCCCCGGT
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