CX290212

Overview
NameCX290212
Unique NameCX290212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: SRC_AVIS2 (Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain PR2257) GN=V-SRC PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 1
Query:   79 IGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEV 645
            +G G FG+V+ G  N  T+VA+K   P +    A F  E +++ + RH  LV L     E+  + ++ EYM  G+L   L G     L   Q +++    A G+ Y+        +HRD+++ANIL+ EN + KVADFGL++   + + T      K    +  PE     + T KSDV+SFG++L E+
Sbjct:  273 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-FLQEAQVMKKLRHEKLVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTEL 455          
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: RIPK4_MOUSE (Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 68/199 (34.17%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   79 IGIGGFGKVYK-GELNDGTKVAVKRG-----NPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSK-TGPEIDQTHVSTAVKGSFGYLDPEYFRRQQ--LTEKSDVYSFGVVLFEVL 648
            +G GGFG+VYK   ++  T +A+K       + R +  L E   ++EM    + R+++ + G C E   + L+ EYME G+L+  L    LP   W  R  I   +A G+++LH   +  ++H D+K ANILLD ++  K++DFGL+K  G           + G+  YL PE  R +      K DVYSF +V++ VL
Sbjct:   28 VGSGGFGQVYKVRHVHWKTWLAIKCSPSLHVDDRERMELLEEAKKMEMA---KFRYILPVYGICQEP--VGLVMEYMETGSLEKLLASEPLP---WDLRFRIVHETAVGMNFLHC-MSPPLLHLDLKPANILLDAHYHVKISDFGLAKCNGMSHSHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSFAIVIWGVL 217          
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: RIPK2_HUMAN (Receptor-interacting serine/threonine-protein kinase 2 OS=Homo sapiens GN=RIPK2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 58/175 (33.14%), Postives = 99/175 (56.57%), Query Frame = 1
Query:  193 EIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYG-SGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSK-TGPEIDQTHVSTAVK--GSFGYLDPEYF---RRQQLTEKSDVYSFGVVLFEVLCAR-PVIDPTLPREMV 693
            E E+L + R  +++ ++G C+E   + ++ EYM NG+L   L+  +  P ++W  R  I    A G++YLH      ++H D+K+ NILLD  F  K+ADFGLSK     + Q+  S +    G+  Y+ PE +   ++ + + K D+YS+ V+ +EVL  + P  D T P +++
Sbjct:   66 EAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHN-MTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRSSKSAPEGGTIIYMPPENYEPGQKSRASIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIM 239          
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: NTRK3_HUMAN (NT-3 growth factor receptor OS=Homo sapiens GN=NTRK3 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 63/223 (28.25%), Postives = 101/223 (45.29%), Query Frame = 1
Query:   79 IGIGGFGKVYKGEL------NDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPS--------------LSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQTHVSTAVKGSF--------------GYLDPEYFRRQQLTEKSDVYSFGVVLFEV 645
            +G G FGKV+  E        D   VAVK     +     +FQ E E+L+  +H H+V   G C + + +I+++EYM++G L   L   G  +              L   Q L I    A G+ YL + +    +HRD+ + N L+  N + K+ DFG+S+     D   +       F               ++ PE    ++ T +SDV+SFGV+L+E+
Sbjct:  544 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH---FVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRLFNPSGNDFCIWCEVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEI 763          
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: KRAF1_CAEBR (Raf homolog serine/threonine-protein kinase OS=Caenorhabditis briggsae GN=lin-45 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 71/209 (33.97%), Postives = 117/209 (55.98%), Query Frame = 1
Query:   55 NNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGN---PRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQR--LEICIGSARGLHYLHTGYAKAVIHRDVKSANI-LLDENFMAKVADFGLS--KTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQ---LTEKSDVYSFGVVLFEVL 648
            N F   + +G G FG VY+GE   GT VA+K+ N   P   Q +A F+ E+ +L + RH +++  +G+  E  E+ +I ++ E  +L  H++    P + ++    ++I    + G++YLH+   K +IHRD+K+ NI L+D+    K+ DFGL+  KT   ++         GS  ++ PE  R Q     T +SDVYSFGV ++E+L
Sbjct:  477 NEFVIHYKVGSGSFGTVYRGEFF-GT-VAIKKLNVVDPTPSQ-MAAFKNEVAVLKKTRHLNVLLFMGWVREP-EIAIITQWCEGSSLYRHIHVQE-PRVEFEMSAVIDILKQVSLGMNYLHS---KNIIHRDLKTNNIFLMDDMSTVKIGDFGLATVKTKWTVNGGQQQQQPTGSILWMAPEVIRMQDDNPYTPQSDVYSFGVCMYEIL 677          
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: FGFR1_MOUSE (Basic fibroblast growth factor receptor 1 OS=Mus musculus GN=Fgfr1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 67/227 (29.52%), Postives = 114/227 (50.22%), Query Frame = 1
Query:   79 IGIGGFGKVYKGEL--------NDGTKVAVKR-GNPRSQQGLAEFQTEIEMLSQF-RHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSW--------------KQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPRE 687
            +G G FG+V   E         N  TKVAVK   +  +++ L++  +E+EM+    +H+++++L+G C +   + +I EY   G L+ +L     P L +              K  +      ARG+ YL +   K  IHRD+ + N+L+ E+ + K+ADFGL++    ID    +T  +    ++ PE    +  T +SDV+SFGV+L+E+        P +P E
Sbjct:  484 LGEGCFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE 707          
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: FGFR1_HUMAN (Basic fibroblast growth factor receptor 1 OS=Homo sapiens GN=FGFR1 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 67/227 (29.52%), Postives = 114/227 (50.22%), Query Frame = 1
Query:   79 IGIGGFGKVYKGEL--------NDGTKVAVKR-GNPRSQQGLAEFQTEIEMLSQF-RHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSW--------------KQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPRE 687
            +G G FG+V   E         N  TKVAVK   +  +++ L++  +E+EM+    +H+++++L+G C +   + +I EY   G L+ +L     P L +              K  +      ARG+ YL +   K  IHRD+ + N+L+ E+ + K+ADFGL++    ID    +T  +    ++ PE    +  T +SDV+SFGV+L+E+        P +P E
Sbjct:  484 LGEGCFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE 707          
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: CDC15_YEAST (Cell division control protein 15 OS=Saccharomyces cerevisiae GN=CDC15 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 64/213 (30.05%), Postives = 104/213 (48.83%), Query Frame = 1
Query:   28 PFVAVQEATNNFDESWVIGIGGFGKVYKGELNDGTK--VAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARP 660
            P     E +  +    VIG G +G VYK  +N  T   VA+K     + + L +   EI +L    H ++V   G+  +  E+ ++ EY  NG+L+  L       LS  +       +  GL YLH    + VIHRD+K+ANILL  +   K+ADFG+S     ++ + ++ A  G+  ++ PE    +  +  SD++S G  + E+L   P
Sbjct:   14 PIQRASEKSVQYHLKQVIGRGSYGVVYKA-INKHTDQVVAIKEVVYENDEELNDIMAEISLLKNLNHNNIVKYHGFIRKSYELYILLEYCANGSLR-RLISRSSTGLSENESKTYVTQTLLGLKYLH---GEGVIHRDIKAANILLSADNTVKLADFGVSTI---VNSSALTLA--GTLNWMAPEILGNRGASTLSDIWSLGATVVEMLTKNP 216          
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: SRC_RAT (Proto-oncogene tyrosine-protein kinase Src OS=Rattus norvegicus GN=Src PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 1
Query:   79 IGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEV 645
            +G G FG+V+ G  N  T+VA+K   P +    A F  E +++ + RH  LV L     E+  + ++ EYM  G+L   L G     L   Q +++    A G+ Y+        +HRD+++ANIL+ EN + KVADFGL++   + + T      K    +  PE     + T KSDV+SFG++L E+
Sbjct:  276 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-FLQEAQVMKKLRHEKLVQLYAVVSEE-PIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVDR---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTEL 458          
BLAST of CX290212 vs. ExPASy Swiss-Prot
Match: SRC_AVISS (Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain S1) GN=V-SRC PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 1
Query:   79 IGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEV 645
            +G G FG+V+ G  N  T+VA+K   P +    A F  E +++ + RH  LV L     E+  + ++ EYM  G+L   L G     L   Q +++    A G+ Y+        +HRD+++ANIL+ EN + KVADFGL++   + + T      K    +  PE     + T KSDV+SFG++L E+
Sbjct:  273 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-FLQEAQVMKKLRHEKLVRLYAVVSEE-PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTEL 455          
The following BLAST results are available for this feature:
BLAST of CX290212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SRC_AVIS24.789e-1833.33Tyrosine-protein kinase transforming protein Src O... [more]
RIPK4_MOUSE4.789e-1834.17Receptor-interacting serine/threonine-protein kina... [more]
RIPK2_HUMAN4.789e-1833.14Receptor-interacting serine/threonine-protein kina... [more]
NTRK3_HUMAN4.789e-1828.25NT-3 growth factor receptor OS=Homo sapiens GN=NTR... [more]
KRAF1_CAEBR4.789e-1833.97Raf homolog serine/threonine-protein kinase OS=Cae... [more]
FGFR1_MOUSE4.789e-1829.52Basic fibroblast growth factor receptor 1 OS=Mus m... [more]
FGFR1_HUMAN4.789e-1829.52Basic fibroblast growth factor receptor 1 OS=Homo ... [more]
CDC15_YEAST4.789e-1830.05Cell division control protein 15 OS=Saccharomyces ... [more]
SRC_RAT6.255e-1833.33Proto-oncogene tyrosine-protein kinase Src OS=Ratt... [more]
SRC_AVISS6.255e-1833.33Tyrosine-protein kinase transforming protein Src O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02021G02SK IF1 Citrus clementina cDNA clone C02021G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290212 ID=CX290212; Name=CX290212; organism=Citrus clementina; type=EST; length=758bp
GCCAATTCTAACTCGGGTTACCGCTTCCCTTTTGTTGCTGTTCAAGAAGC
CACAAACAACTTCGACGAGAGCTGGGTTATTGGGATTGGTGGTTTTGGGA
AGGTATACAAAGGAGAGCTGAATGATGGTACAAAAGTGGCTGTTAAGAGG
GGAAACCCCCGATCCCAGCAGGGACTTGCAGAGTTCCAAACCGAGATTGA
GATGCTGTCTCAGTTCCGGCACCGCCATCTGGTTTCATTAATTGGATATT
GTGATGAAAAGAATGAGATGATCTTGATTTATGAATATATGGAAAATGGG
ACCCTCAAGGGTCATCTCTATGGCTCCGGTCTTCCCAGCTTGAGTTGGAA
GCAGAGACTTGAGATTTGCATTGGATCTGCTAGGGGACTTCATTACCTTC
ACACTGGCTATGCCAAAGCAGTTATTCACCGTGATGTAAAGTCTGCAAAT
ATCTTACTTGATGAGAACTTCATGGCAAAGGTTGCTGATTTTGGATTGTC
CAAGACAGGACCTGAAATTGATCAAACCCATGTGAGTACTGCAGTGAAAG
GAAGTTTTGGGTATCTTGATCCTGAATACTTCAGAAGGCAGCAACTAACT
GAAAAGTCAGATGTTTATTCATTCGGAGTGGTTTTGTTTGAAGTCCTTTG
TGCCAGACCTGTTATAGATCCAACTCTTCCGAGGGAAATGGTGAACTTTA
GCCGATGGGCCCATGAATGGCAGAATAAGGGGCAGCTGGATCAATCATCG
ACCTACTC
back to top