CX290213

Overview
NameCX290213
Unique NameCX290213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: SKB1_SCHPO (Protein arginine N-methyltransferase skb1 OS=Schizosaccharomyces pombe GN=skb1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.479e-21
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 3
Query:   12 RGEPVFTFTHPN-----FSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTA---TPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCV-----------ASPNPSPVHNSNGRSY 380
            R + +++F HPN     ++    N+R+  +RF+  S     ++HGFAGYF+A LYKD+ L I P+T    +P+MFSWF I+ P++ P+ +   S LE H WR     +VW+EWC               + + VHN +G+++
Sbjct:  502 RFQSLWSFHHPNKDSEVYTKNLHNKRFASVRFQASSP---GILHGFAGYFEATLYKDISLSIMPATMEAKSPDMFSWFPIYMPIKKPMYVPENSQLEFHMWRLTDGMRVWFEWCANAYLVLRNGSQIKLSSTEVHNISGKAF 640          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_CAEEL (Protein arginine N-methyltransferase 5 OS=Caenorhabditis elegans GN=prmt-5 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.223e-20
Identity = 55/129 (42.64%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPN------PSPVHNSNGRSYWV 386
            +PVFTF HPNF    SN+R   + F +  D  + ++ GFAGYFD  LYK V L IEPST TP M SWF    PLR  + +  G  + +   R   +T VWYEW V           +P+ N NG SY++
Sbjct:  608 KPVFTFEHPNFMNS-SNERSDSIEFVM--DRNADLM-GFAGYFDLQLYKTVMLSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKIDRKVDNTGVWYEWHVEKKKTNGESVSTPIQNPNGESYYM 732          
The following BLAST results are available for this feature:
BLAST of CX290213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SKB1_SCHPO4.479e-2135.21Protein arginine N-methyltransferase skb1 OS=Schiz... [more]
ANM5_CAEEL2.223e-2042.64Protein arginine N-methyltransferase 5 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionC02021G03SK IF1 Citrus clementina cDNA clone C02021G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290213 ID=CX290213; Name=CX290213; organism=Citrus clementina; type=EST; length=565bp
AATTCGGCACGAGGGGCGAACCTGTCTTTACATTTACTCATCCAAATTTC
TCAACTAAGAAGAGCAATCAGCGCTACAAAAAGCTGAGGTTTGAGATACC
TAGTGATACTGGGTCATCCATGGTGCATGGGTTCGCTGGTTATTTTGATG
CGATGCTTTACAAAGATGTGCATCTAGGTATTGAGCCATCAACGGCAACA
CCAAACATGTTCAGCTGGTTTGCAATATTTTTTCCACTGAGGACACCGGT
ATGTATTCGACCTGGTTCTCCACTTGAGGTGCATTTTTGGCGTTGTTGTG
GTTCTACCAAGGTTTGGTACGAATGGTGTGTTGCTTCTCCCAATCCATCA
CCTGTTCACAACAGCAATGGTCGTTCGTATTGGGTTGGCCTTTAGCATTT
CCTCTTTCAAAGGTTAGAACACTAGTTACAGACACAGGTGTATGAAAGCT
GTAACCTTATAAAAGTAGATAGCCATTTCAAGAGGAAGTAGAACAGATTT
TCAGCTGTTCAGCTGTTAAGGAACAGAAAAAGAGTGTAAAATTTAATCCA
GACTTTGATTTCAAC
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