CX290217

Overview
NameCX290217
Unique NameCX290217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   97 RKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 405
            RKG W+ EED  L ++I ++G   W ++   AGL+R GKSCRLRW+NYLRP +KR  I+ EE+  I+  H+  GN+WS+IAK LPGRTDNEIKN+W + ++K+
Sbjct:   11 RKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   94 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 405
            +RKG WT EED +L   I  +GEG W+ +   AGL R  KSCRLRWLNYL+P +KRG ++ +E  L++ LH   GNRWS IA  LPGRT N++KN+W T + K+
Sbjct:    8 LRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   94 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 405
            +RKG WT EED +L   I  +GEG W+ +   AGL R  KSCRLRWLNYL+P +KRG  + +E  L++ LH   GNRWS IA  LPGRT N++KN+W T + K+
Sbjct:    8 LRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   94 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 405
            +RKG WT EED++L   I  +GEG W+ +    GL R  KSCRLRWLNYL+P +KRG +  +E  L++ LH   GNRWS IA  LPGRT N++KN+W T + K+
Sbjct:    8 LRKGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   94 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 405
            +RKG WT EED +L   I  +GEG W+ +   AGL R  KSCRLRWLNYL+P +KRG ++ +E  L++ LH   GNRWS IA  LPGRT N++KN+W T + K+
Sbjct:    8 LRKGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTR 393
            K  W  EED IL +Y+  +G+  W  + K  GL     SCR RW+N+L+P +K+G  T EE+  +++LHA  GN+WS++A+  PGRTDNEIKNFW  R
Sbjct:   18 KSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNAR 115          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I ++  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I + H + GNRW++IAK LPGRTDN +KN W + ++++++Q
Sbjct:   18 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKVEQ 124          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L PDVK+ + T EE  +I   H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   83 ELVKGPWTKEEDQRVIELVHKYGPKKWSIIAKH--LKGRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQ 189          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I E H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I E H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
The following BLAST results are available for this feature:
BLAST of CX290217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
LAF1_ARATH3.541e-2853.40Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB75_ARATH7.888e-2852.88Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MY114_ARATH7.888e-2852.88Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MY113_ARATH1.345e-2751.92Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYB90_ARATH2.295e-2752.88Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MY104_ARATH1.066e-2447.96Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB_AVIMB1.179e-2346.79Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYBA_XENLA1.539e-2348.62Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYBA_MOUSE1.539e-2348.62Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN1.539e-2348.62Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02021G07SK IF1 Citrus clementina cDNA clone C02021G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290217 ID=CX290217; Name=CX290217; organism=Citrus clementina; type=EST; length=717bp
TTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTTAATTTCTCTATGTAAA
TTAAGAGATGGATAAAACTCCATGCAATTCTCAAGAAGCTGAAGTCCGAA
AGGGGCCATGGACCATGGAAGAAGACTTGATCCTCATCAACTATATAGCA
AATCACGGCGAAGGCGTCTGGAACTCACTAGCTAAAGCAGCTGGCCTAAA
ACGTACCGGAAAGAGTTGCCGGCTCAGGTGGCTGAACTATCTCCGACCGG
ACGTTAAGAGGGGGAATATTACACCAGAGGAGCAGCTTTTGATCATGGAG
CTTCATGCCAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTACC
AGGAAGGACCGACAATGAAATTAAGAATTTTTGGAGAACCAGAATCCAGA
AGCAAATTAAGCAAGCAGAAACATTTTCAGGGCAAAGTTCAGAGGCCAAT
GAGCAAGCAAGCTCAAGCCAAATGTCCACTGCTGCATACACGGTGGAAGA
TTATTCAGCACCACAATATCCATTAAACAATAATATGGATCCTCATCAAG
CTTTTCCATTAGATAATATGGCACCTATTCCTTCTGAAGTTAATGAAAAC
TACTGGAATATGGAGGATCTCTGGTTATATAACGGGGATTAAGCATCATG
ATTATTTATATGCAGGGGTTCGAGTAATGATTTTGGATCCCTTATATATT
AGCGGGGCTTAAACTTT
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