CX290217

Overview
NameCX290217
Unique NameCX290217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I + H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          

HSP 2 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   79 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            S +  + K  WT EED  L   +  +G   W  +A      RT   C+ RW   L P++ +G  T EE   ++EL  K+G  RWS IAKHL GR   + +  W   +  ++K+
Sbjct:   33 SGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 144          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I + H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          

HSP 2 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   79 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            S +  + K  WT EED  L   +  +G   W  +A      RT   C+ RW   L P++ +G  T EE   ++EL  K+G  RWS IAKHL GR   + +  W   +  ++K+
Sbjct:   33 SGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 144          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I + H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I + H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          

HSP 2 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   79 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            S +  + K  WT EED  L   +  +G   W  +A      RT   C+ RW   L P++ +G  T EE   ++EL  K+G  RWS IAKHL GR   + +  W   +  ++K+
Sbjct:   33 SGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 144          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T  E  +I E H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.903e-22
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE   I E H + GNRW++IAK LPGRTDN IKN W + ++++ +Q
Sbjct:   86 ELIKGPWTKEEDQRVIELVHKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQ 192          

HSP 2 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 417
            K  WT EED  L   +  +G   W  +A      RT   C+ RW   L P++ +G  T EE   ++EL  K+G  RWS IAKHL GR   + +  W   +  ++K++
Sbjct:   37 KTRWTREEDEKLKKLVEQNGTEEWKVIASFLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKS 142          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.903e-22
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            KGPWT EED  +I  +  +G   W  +AK   LK R GK CR RW N+L P+VK+ + T EE  +I E H   GNRW++IAK LPGRTDN +KN W + I++++
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184          

HSP 2 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 1
Query:   55 EMDKTPCNSQEAEVR-------KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR-WSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 417
            + D+  C   +++V        K  WT EED  L   + ++G+  W  LA      R+ + C+ RWL  L PD+ +G  T EE   ++EL  K+G + W+ IAKHL GR   + +  W   +  ++K++
Sbjct:    9 DQDELHCQDTDSDVPEQRDGRCKVKWTQEEDEQLKMLVRHYGQNDWKFLASHFP-NRSDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKS 136          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            KGPWT EED  +I  +  +G   W  +AK   LK R GK CR RW N+L P+VK+   T EE  +I E H   GNRW++IAK LPGRTDN +KN W + I++++
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKV 184          

HSP 2 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR-WSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 417
            K  WT EED  L   +   G+  W  LA      RT + C+ RWL  L PD+ +G  T EE   ++EL  K+G + W+ IAKHL GR   + +  W   +  ++K++
Sbjct:   31 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKS 136          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            KGPWT EED  +I  +  +G   W  +AK   LK R GK CR RW N+L P+VK+   T EE  +I E H   GNRW++IAK LPGRTDN +KN W + I++++
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKV 184          

HSP 2 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR-WSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 417
            K  WT EED  L   +   G+  W  LA      RT + C+ RWL  L PD+ +G  T EE   ++EL  K+G + W+ IAKHL GR   + +  W   +  ++K++
Sbjct:   31 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKS 136          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.103e-21
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIK 411
            KGPWT EED  +I  +  +G   W  +AK     R GK CR RW N+L P+VK+ + T EE  +I + H   GNRW++IAK LPGRTDN +KN W + I+++++
Sbjct:   83 KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLR-GRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVE 185          
The following BLAST results are available for this feature:
BLAST of CX290217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB_MOUSE7.640e-2347.71Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN7.640e-2347.71Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK7.640e-2347.71Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN7.640e-2347.71Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBA_CHICK9.978e-2347.71Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYB_XENLA2.903e-2248.62Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYBB_CHICK2.903e-2249.04Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYBB_MOUSE8.447e-2249.04Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN8.447e-2249.04Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYBB_XENLA1.103e-2146.15Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]

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Properties
Property NameValue
Genbank descriptionC02021G07SK IF1 Citrus clementina cDNA clone C02021G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290217 ID=CX290217; Name=CX290217; organism=Citrus clementina; type=EST; length=717bp
TTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTTAATTTCTCTATGTAAA
TTAAGAGATGGATAAAACTCCATGCAATTCTCAAGAAGCTGAAGTCCGAA
AGGGGCCATGGACCATGGAAGAAGACTTGATCCTCATCAACTATATAGCA
AATCACGGCGAAGGCGTCTGGAACTCACTAGCTAAAGCAGCTGGCCTAAA
ACGTACCGGAAAGAGTTGCCGGCTCAGGTGGCTGAACTATCTCCGACCGG
ACGTTAAGAGGGGGAATATTACACCAGAGGAGCAGCTTTTGATCATGGAG
CTTCATGCCAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTACC
AGGAAGGACCGACAATGAAATTAAGAATTTTTGGAGAACCAGAATCCAGA
AGCAAATTAAGCAAGCAGAAACATTTTCAGGGCAAAGTTCAGAGGCCAAT
GAGCAAGCAAGCTCAAGCCAAATGTCCACTGCTGCATACACGGTGGAAGA
TTATTCAGCACCACAATATCCATTAAACAATAATATGGATCCTCATCAAG
CTTTTCCATTAGATAATATGGCACCTATTCCTTCTGAAGTTAATGAAAAC
TACTGGAATATGGAGGATCTCTGGTTATATAACGGGGATTAAGCATCATG
ATTATTTATATGCAGGGGTTCGAGTAATGATTTTGGATCCCTTATATATT
AGCGGGGCTTAAACTTT
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