CX290217

Overview
NameCX290217
Unique NameCX290217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 46/112 (41.07%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   79 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            ++++ + KG WT EED +LI  +  +G   W+ +A+     R GK CR RW N+LRPD+K+   + EE  +++E H + GN+W++IAK LPGRT+N IKN W    ++Q  +
Sbjct:  210 TKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 320          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 405
            E+ KGPWT +ED ++I  + N G   W  +A+     R GK CR RW N+L P++K+   T +E  +I + H + GN+W+KIAK LPGRTDN IKN W + ++++
Sbjct:  133 ELIKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLN-GRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK 236          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLA-KAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            KGPW  EED  L+  +   G   W+S+A K  G  R GK CR RW N+L P+V++ N TPEE  +I++ HA  GN+W+ I+K L GR  N IKN W + + K+I
Sbjct:  277 KGPWKDEEDAKLVELVNKCGPKEWSSIAAKIPG--RIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKKI 378          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 41/106 (38.68%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   91 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            E+ KGPW+ EED  +I+ +  +G   W+++++     R GK CR RW N+L P + +   T EE+L ++  H  +GN+W+++ K LPGR+DN IKN W + ++K++
Sbjct:   84 ELVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLP-GRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKL 188          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  109 WTMEEDLILINYIANHGEGVWNSLAKAAG--LKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            W  EED IL+ Y+  +G   W+ +++     L R  KSC  RW NYLRP +K+G++T +EQ L++ L AK GN+W KIA  +PGRT   +  +W    +KQ ++
Sbjct:   12 WRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 115          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  109 WTMEEDLILINYIANHGEGVWNSLAKA--AGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            W  EED +L  Y+  +G   W+ +++     L R  KSC  RW NYLRP +K+G++T EEQ L++ L AK GN+W KIA  +PGRT   +  +W    +KQ ++
Sbjct:    7 WRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   76 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAE 420
            +S      KG WT EED  L + +  HG   W  +A    L R G+ CR RW N L P +KR   T EE  +I++ H+K+GN+W++I+K LPGRT+  IKN W + +++++ + +
Sbjct:  749 SSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCL-RNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSKKQ 862          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 402
            KG WT +ED  +I  +  +G   W+ +A    LK R GK CR RW N+L P++K+   + EE  +I + HA  GN+W++IAK LPGRTDN IKN W + +++
Sbjct:  201 KGAWTKDEDDKVIELVKTYGPKKWSDIA--LHLKGRMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKR 300          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  100 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 405
            KGPW+ EED  L   +  +G   W  ++K+    R+GKSCRLRW N L P V+    + EE   I   HA++GN+W+ IA+ L GRTDN +KN W + ++++
Sbjct:    6 KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  109 WTMEEDLILINYIANHGEGVWNSLAKAAG--LKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            W+ EED +L  Y+   G   W+ +++     L R  KSC  RW NYL+P +K+G++T EEQ L++ L  K GN+W KIA  +PGRT   +  +W    +KQ ++
Sbjct:    7 WSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110          
The following BLAST results are available for this feature:
BLAST of CX290217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB98_ARATH1.882e-2141.07Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYB_DROME7.151e-2143.81Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MYBQ_DICDI7.906e-2046.15Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MB3R1_ARATH7.906e-2038.68Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
RS2_ORYSJ6.693e-1941.35Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE1.142e-1841.35Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
MYBAA_DICDI1.491e-1839.13Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYBA_DICDI3.322e-1844.12Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
MYB44_ARATH3.322e-1842.16Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
AS1_ARATH2.153e-1739.42Transcription factor AS1 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC02021G07SK IF1 Citrus clementina cDNA clone C02021G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290217 ID=CX290217; Name=CX290217; organism=Citrus clementina; type=EST; length=717bp
TTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTTAATTTCTCTATGTAAA
TTAAGAGATGGATAAAACTCCATGCAATTCTCAAGAAGCTGAAGTCCGAA
AGGGGCCATGGACCATGGAAGAAGACTTGATCCTCATCAACTATATAGCA
AATCACGGCGAAGGCGTCTGGAACTCACTAGCTAAAGCAGCTGGCCTAAA
ACGTACCGGAAAGAGTTGCCGGCTCAGGTGGCTGAACTATCTCCGACCGG
ACGTTAAGAGGGGGAATATTACACCAGAGGAGCAGCTTTTGATCATGGAG
CTTCATGCCAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTACC
AGGAAGGACCGACAATGAAATTAAGAATTTTTGGAGAACCAGAATCCAGA
AGCAAATTAAGCAAGCAGAAACATTTTCAGGGCAAAGTTCAGAGGCCAAT
GAGCAAGCAAGCTCAAGCCAAATGTCCACTGCTGCATACACGGTGGAAGA
TTATTCAGCACCACAATATCCATTAAACAATAATATGGATCCTCATCAAG
CTTTTCCATTAGATAATATGGCACCTATTCCTTCTGAAGTTAATGAAAAC
TACTGGAATATGGAGGATCTCTGGTTATATAACGGGGATTAAGCATCATG
ATTATTTATATGCAGGGGTTCGAGTAATGATTTTGGATCCCTTATATATT
AGCGGGGCTTAAACTTT
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