CX290217

Overview
NameCX290217
Unique NameCX290217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB1_NEUCR (Myb-like DNA-binding protein myb-1 OS=Neurospora crassa GN=rca-1 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   79 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW 384
            S   + R+GPW+  ED  LI  + + G G W ++A+  G  RT K CR RW   L+P +  G +T EE  +I+      G RW+ IA+ L GR+DN +KN+W
Sbjct:    2 SNMPDQRRGPWSAGEDQRLIKLVKDLGPGNWVNVARILGT-RTPKQCRERWHQNLKPGLNHGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNYW 102
[Close]
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 33/106 (31.13%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:   94 VRKGP--WTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 405
            +R+ P  WT EED  L   ++ +GE  W  ++   G ++TG  C   W   L PD+++G    +E+ L++ L  + G+ W KIAK +  RTD + +  +   +Q +
Sbjct:   63 IRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTDIQCRYQYLKSLQSR 168
The following BLAST results are available for this feature:
BLAST of CX290217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB1_NEUCR4.489e-1540.20Myb-like DNA-binding protein myb-1 OS=Neurospora c... [more]
MYBM_DICDI6.708e-1131.13Myb-like protein M OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02021G07SK IF1 Citrus clementina cDNA clone C02021G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290217 ID=CX290217; Name=CX290217; organism=Citrus clementina; type=EST; length=717bp
TTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTTAATTTCTCTATGTAAA
TTAAGAGATGGATAAAACTCCATGCAATTCTCAAGAAGCTGAAGTCCGAA
AGGGGCCATGGACCATGGAAGAAGACTTGATCCTCATCAACTATATAGCA
AATCACGGCGAAGGCGTCTGGAACTCACTAGCTAAAGCAGCTGGCCTAAA
ACGTACCGGAAAGAGTTGCCGGCTCAGGTGGCTGAACTATCTCCGACCGG
ACGTTAAGAGGGGGAATATTACACCAGAGGAGCAGCTTTTGATCATGGAG
CTTCATGCCAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTACC
AGGAAGGACCGACAATGAAATTAAGAATTTTTGGAGAACCAGAATCCAGA
AGCAAATTAAGCAAGCAGAAACATTTTCAGGGCAAAGTTCAGAGGCCAAT
GAGCAAGCAAGCTCAAGCCAAATGTCCACTGCTGCATACACGGTGGAAGA
TTATTCAGCACCACAATATCCATTAAACAATAATATGGATCCTCATCAAG
CTTTTCCATTAGATAATATGGCACCTATTCCTTCTGAAGTTAATGAAAAC
TACTGGAATATGGAGGATCTCTGGTTATATAACGGGGATTAAGCATCATG
ATTATTTATATGCAGGGGTTCGAGTAATGATTTTGGATCCCTTATATATT
AGCGGGGCTTAAACTTT
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