CX290233

Overview
NameCX290233
Unique NameCX290233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10616 contig Ccv1_Contig10616:120..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.101e-81
Identity = 149/205 (72.68%), Postives = 178/205 (86.83%), Query Frame = 3
Query:   60 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE---TSGQETVKLAIRALLEVVESGGK 665
            +RYDRAITVFSPDGHLFQVEYA EAV+KG+ AVG+RGT+IVVLGVEKKS  KLQD R VRKI +LD+H+ +A AGL ADARV+++RAR+ECQSH+LTVEDPVTVEYITR+IA L+QKYTQS G RPFG+S LIVGFD   G+P LYQTDPSGT+ AWKANA GR++ ++REFLEKNY E   ++ +E +KLAI+ALLEVV+SGGK
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDD-DGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQSGGK 206          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 7.704e-80
Identity = 144/202 (71.29%), Postives = 176/202 (87.13%), Query Frame = 3
Query:   60 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGK 665
            ARYDRAITVFSPDGHLFQVEYA+EAVRKG  AVGVRG D++VLGVEKK+  KLQD+R +RKIV LD+HI L  AGL AD+RVL+++A +ECQS+RLTVED  +VEYI+++IAG+QQ+YTQSGGVRPFG+STLIVGFD   G P+LYQTDPSG++S+WKA A GR+S S+ EFLEKNY + S +E++KLA+RALLE+VESG K
Sbjct:    4 ARYDRAITVFSPDGHLFQVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAKLQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYTQSGGVRPFGISTLIVGFDT-DGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNYTDVSEEESIKLAVRALLEIVESGNK 204          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.242e-79
Identity = 148/203 (72.91%), Postives = 172/203 (84.73%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE---TVKLAIRALLEVVESGGK 665
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG DIVVLGVEKKS  KLQD R VRKI +LD+++ +A AGL ADAR+++NRAR+ECQSHRLTVEDPVTVEYITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLEKNY + + +    T+KL I+ALLEVV+SGGK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGK 204          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.242e-79
Identity = 148/203 (72.91%), Postives = 172/203 (84.73%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE---TVKLAIRALLEVVESGGK 665
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG DIVVLGVEKKS  KLQD R VRKI +LD+++ +A AGL ADAR+++NRAR+ECQSHRLTVEDPVTVEYITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLEKNY + + +    T+KL I+ALLEVV+SGGK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGK 204          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.242e-79
Identity = 148/203 (72.91%), Postives = 172/203 (84.73%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE---TVKLAIRALLEVVESGGK 665
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG DIVVLGVEKKS  KLQD R VRKI +LD+++ +A AGL ADAR+++NRAR+ECQSHRLTVEDPVTVEYITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLEKNY + + +    T+KL I+ALLEVV+SGGK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGK 204          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 292.352 bits (747), Expect = 1.453e-78
Identity = 150/211 (71.09%), Postives = 175/211 (82.94%), Query Frame = 3
Query:   60 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACA------GLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE---TSGQETVKLAIRALLEVVESGGK 665
            +RYDRAITVFSPDGHLFQVEYA EAV+KG+ AVG+RGT+IVVLGVEKKS  KLQD R VRKI +LD+H+ +A A      GL ADARV++NRAR+ECQSH+LTVEDPVTVEYITR+IA L+QKYTQS G RPFG+S LIVGFD   G+  LYQTDPSGT+ AWKANA GR++ ++REFLEKNY E    S  E +KLAI+ALLEVV+SGGK
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDD-DGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGK 212          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.478e-78
Identity = 146/203 (71.92%), Postives = 171/203 (84.24%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE---TVKLAIRALLEVVESGGK 665
            YDRAITVFSPDGHLFQVEYA EA++KG+ AVGVRG DIVVLGVEKKS  KLQD R VRKI +LD+++ +A AGL ADAR+++NRAR+ECQSHRLTVED VTVEYITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLEKNY + + +    T+KL I+ALLEVV+SGGK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAIKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGK 204          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.521e-78
Identity = 146/203 (71.92%), Postives = 171/203 (84.24%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE---TVKLAIRALLEVVESGGK 665
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG +IVVLGVEKKS  KLQD R VRKI +LD ++ +A AGL ADAR+++NRAR+ECQSHRLTVEDPVTVEYITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLEK+Y + + +    T+KL I+ALLEVV+SGGK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGK 204          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.521e-78
Identity = 146/203 (71.92%), Postives = 171/203 (84.24%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE---TVKLAIRALLEVVESGGK 665
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG +IVVLGVEKKS  KLQD R VRKI +LD ++ +A AGL ADAR+++NRAR+ECQSHRLTVEDPVTVEYITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLEK+Y + + +    T+KL I+ALLEVV+SGGK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGK 204          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.360e-76
Identity = 147/209 (70.33%), Postives = 171/209 (81.82%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACA------GLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE---TVKLAIRALLEVVESGGK 665
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG DIVVLGVEKKS  KLQD R VRKI +LD+++ +A A      GL ADAR+++NRAR+ECQSHRLTV DPVTVEYITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLEKNY + + +    T+KL I+ALLEVV+SGGK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGK 210          
The following BLAST results are available for this feature:
BLAST of CX290233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA7L_MOUSE9.101e-8172.68Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7_DICDI7.704e-8071.29Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA7_MOUSE2.242e-7972.91Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7_HUMAN2.242e-7972.91Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSA7_BOVIN2.242e-7972.91Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA7L_HUMAN1.453e-7871.09Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA7_PONAB2.478e-7871.92Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA7B_XENLA5.521e-7871.92Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA5.521e-7871.92Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA7_RAT1.360e-7670.33Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC02021H11SK IF1 Citrus clementina cDNA clone C02021H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290233 ID=CX290233; Name=CX290233; organism=Citrus clementina; type=EST; length=667bp
AGGAAAAAATCCATTCAAATAAAAAACAAACTCGAGACCGAAAAAAGGAA
GACAAAATGGCTCGATACGATCGCGCGATCACGGTATTTTCTCCGGACGG
CCATCTATTCCAAGTCGAATACGCGCTTGAAGCCGTCCGTAAAGGAAACG
CCGCCGTTGGGGTCCGCGGCACCGACATTGTCGTCCTCGGCGTCGAGAAA
AAATCCGCCGTCAAGCTCCAAGACTCCAGAATGGTGAGGAAGATTGTGTC
ATTGGATAATCACATTGCACTTGCCTGTGCGGGTCTGAAAGCGGATGCAC
GTGTCTTGGTTAACAGAGCGCGTATTGAATGTCAGAGTCATAGGCTTACC
GTAGAGGATCCTGTCACAGTTGAATATATAACGCGGTACATTGCTGGGCT
TCAGCAGAAGTATACACAGAGTGGTGGGGTGAGGCCTTTTGGTCTTTCGA
CCCTGATTGTTGGTTTTGACCCCTATACAGGTGTGCCATCTCTTTATCAG
ACTGATCCATCGGGAACTTTTTCAGCATGGAAAGCCAATGCCACGGGGAG
GAACTCAAATTCAATAAGGGAGTTCTTGGAGAAAAATTATAAAGAAACCT
CTGGGCAAGAAACTGTGAAGTTGGCCATTCGTGCTTTGCTTGAAGTTGTT
GAGAGTGGAGGCAAGAA
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