CX290233

Overview
NameCX290233
Unique NameCX290233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10616 contig Ccv1_Contig10616:120..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.501e-46
Identity = 102/199 (51.26%), Postives = 131/199 (65.83%), Query Frame = 3
Query:   60 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK-ETSGQETVKLAIRALLEVVE 653
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + VVL VEK+   +L +     KI  +D+HIA A +G+ ADARVLVNRAR+E Q HRLT  +P  +  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E+ YK + S +E +KLAI AL + +E
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTME 203          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.267e-46
Identity = 97/198 (48.99%), Postives = 134/198 (67.68%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK-ETSGQETVKLAIRALLEVVES 656
            YDRAITVFSPDG LFQVEYA EAV++G  A+G++  + V+L  +K+   KL ++  + KI  +D HI  A +GL ADARVL++RARIE Q +RLT ++P+TV+ + + I   +Q+YTQ GGVRPFG+S LI G D    VP LY+TDPSG    +KA A G   N++ EF EK Y+ + S  + + L + A+   +ES
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDE---VPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES 202          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45
Identity = 101/199 (50.75%), Postives = 129/199 (64.82%), Query Frame = 3
Query:   60 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK-ETSGQETVKLAIRALLEVVE 653
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D VVL VEK+   +L +     KI  +D+HIA A +G+ ADARVLVNRAR+E Q HRLT  +P  +  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E  Y+ + +  E +KLAI AL + +E
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTME 203          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.717e-45
Identity = 98/199 (49.25%), Postives = 133/199 (66.83%), Query Frame = 3
Query:   60 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK-ETSGQETVKLAIRALLEVVE 653
            A YDRAITVFSPDG LFQV+YA EAV++G  AVGV+  D VVL VEK+   KL +     KI  +D+HIA A +G+ ADARVLV+RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E+ Y+ E + +E +KLA+ AL +++E
Sbjct:    8 AGYDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIME 203          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.717e-45
Identity = 98/200 (49.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   60 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES 656
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + VVL VEK+   +L +     KI  +D+HIA A +G+ ADARVLVNRAR+E Q +RLT  +P  V  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E+ Y++    ++ +KLA+ AL + +E+
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR---PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMEN 204          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.161e-45
Identity = 97/194 (50.00%), Postives = 128/194 (65.98%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLE 644
            YDRAITVFSPDG LFQVEYA EAV++G  A+G++  + VVLGV+K+   KL +   + K+  +D HI  A AGL ADARVLV RARIE Q++R T  +P+ V+ + + I  L+Q YTQ GGVRPFG + LI G D  T    L++TDPSG  +  KA A G       +  E+ Y+E  + QE ++LA+RAL E
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVD--TKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYE 201          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.051e-44
Identity = 90/201 (44.78%), Postives = 135/201 (67.16%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVESGGK 665
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    VV+  EK+ A  L D   + K+  +D+H+  + AGL +D RVL++ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP L+ T+PSG +  ++A A G+   +  EFLEKNYKE  + +ET+ LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEK 208          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.793e-44
Identity = 90/201 (44.78%), Postives = 135/201 (67.16%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVESGGK 665
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    VV+  EK+ A  L D   + K+  +D+H+  + AGL +D RVL++ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++T+ LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEK 208          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.793e-44
Identity = 90/201 (44.78%), Postives = 135/201 (67.16%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVESGGK 665
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    VV+  EK+ A  L D   + K+  +D+H+  + AGL +D RVL++ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++T+ LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEK 208          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.793e-44
Identity = 90/201 (44.78%), Postives = 135/201 (67.16%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVESGGK 665
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    VV+  EK+ A  L D   + K+  +D+H+  + AGL +D RVL++ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++T+ LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEK 208          
The following BLAST results are available for this feature:
BLAST of CX290233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA_PYRHO2.501e-4651.26Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_ARCFU3.267e-4648.99Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_PYRAB1.621e-4550.75Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_THESM4.717e-4549.25Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_PYRFU4.717e-4549.00Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_METKA6.161e-4550.00Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_SULSO1.051e-4444.78Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSMA_SULIY1.793e-4444.78Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN1.793e-4444.78Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM1.793e-4444.78Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionC02021H11SK IF1 Citrus clementina cDNA clone C02021H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290233 ID=CX290233; Name=CX290233; organism=Citrus clementina; type=EST; length=667bp
AGGAAAAAATCCATTCAAATAAAAAACAAACTCGAGACCGAAAAAAGGAA
GACAAAATGGCTCGATACGATCGCGCGATCACGGTATTTTCTCCGGACGG
CCATCTATTCCAAGTCGAATACGCGCTTGAAGCCGTCCGTAAAGGAAACG
CCGCCGTTGGGGTCCGCGGCACCGACATTGTCGTCCTCGGCGTCGAGAAA
AAATCCGCCGTCAAGCTCCAAGACTCCAGAATGGTGAGGAAGATTGTGTC
ATTGGATAATCACATTGCACTTGCCTGTGCGGGTCTGAAAGCGGATGCAC
GTGTCTTGGTTAACAGAGCGCGTATTGAATGTCAGAGTCATAGGCTTACC
GTAGAGGATCCTGTCACAGTTGAATATATAACGCGGTACATTGCTGGGCT
TCAGCAGAAGTATACACAGAGTGGTGGGGTGAGGCCTTTTGGTCTTTCGA
CCCTGATTGTTGGTTTTGACCCCTATACAGGTGTGCCATCTCTTTATCAG
ACTGATCCATCGGGAACTTTTTCAGCATGGAAAGCCAATGCCACGGGGAG
GAACTCAAATTCAATAAGGGAGTTCTTGGAGAAAAATTATAAAGAAACCT
CTGGGCAAGAAACTGTGAAGTTGGCCATTCGTGCTTTGCTTGAAGTTGTT
GAGAGTGGAGGCAAGAA
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