CX290233
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.862e-42 Identity = 92/197 (46.70%), Postives = 127/197 (64.47%), Query Frame = 3 Query: 66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETS-GQETVKLAIRALLEVVE 653 YDRAIT+FSP+G L+QVEYA EAVR+G AVG++ D VVL V+++ KL D + KI +D+HI A +GL ADARVL++RAR+E Q +R++ + +TVE + + I ++Q YTQ GG RPFGL+ LI G D ++ L++TDPSG +KA A G E LE Y E E ++LA+ AL + E Sbjct: 10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTE 204
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.088e-41 Identity = 91/197 (46.19%), Postives = 127/197 (64.47%), Query Frame = 3 Query: 66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVE 653 YDRAITVFSPDG LFQVEYA EAV++G AVG++ D VVL V+K+ +L ++ + KI +D+HI A +GL ADAR LV+RAR+E Q +R++ ++ + VE I++ I +Q YTQ GGVRP+G + LI G D P L++TDPSG +KA A G N++ E E +Y+E + L + AL + E Sbjct: 9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAE 203
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.420e-41 Identity = 91/199 (45.73%), Postives = 130/199 (65.33%), Query Frame = 3 Query: 66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE-TVKLAIRALLEVVESG 659 YDR IT+FSPDG L+QVEYA EAV++G A+VGVR D VV+ ++ + L + + KI +D+H+ +A AG ADAR L++ AR + Q +RL ++P +VE +T+ I Q+YTQ+GG RPFG++ L+ G + G P L++TDPSGT W+A A G + I+ FLE+ Y E E ++LA+RAL V E G Sbjct: 9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIE--DGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDG 205
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.855e-41 Identity = 91/192 (47.40%), Postives = 127/192 (66.15%), Query Frame = 3 Query: 66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY-KETSGQETVKLAIRAL 638 YDR IT+FSPDG L+QVEYA EAV++G A+VG+R D +VL +K+S L + V KI D+H+ +A AG ADAR L++ AR + Q +RL +PV +E +T+ + Q+YTQ GG RPFG++ LI G + G P LY+TDPSGT WKA + G + + ++E LE+NY +E S E V LA+R + Sbjct: 10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIE--DGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTI 199
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.855e-41 Identity = 94/201 (46.77%), Postives = 129/201 (64.18%), Query Frame = 3 Query: 48 EDKMARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 647 +++ YDR IT+FSPDG L+QVEYA EAV++G A++GVR +D VVL V+K+ L + V KI D+HI +A AG ADAR L++ AR + Q ++L +PV VE +T+ I Q+YTQ GG RPFG++ +I G G P L++TDPSGT WKA A G + IR++LE++Y E E V LA+ AL V Sbjct: 4 QNQQQAYDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGGI--VNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASV 202
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41 Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 3 Query: 63 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVES 656 RYD T+FSP+G L+QVEYA+EA+ +A+GV D VVL EKK KL Q SR K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+++Y++ + +E V LA++ L + ++S Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41 Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 3 Query: 63 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVES 656 RYD T+FSP+G L+QVEYA+EA+ +A+GV D VVL EKK KL Q SR K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+++Y++ + +E V LA++ L + ++S Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41 Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 3 Query: 63 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVES 656 RYD T+FSP+G L+QVEYA+EA+ +A+GV D VVL EKK KL Q SR K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+++Y++ + +E V LA++ L + ++S Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41 Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 3 Query: 63 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVES 656 RYD T+FSP+G L+QVEYA+EA+ +A+GV D VVL EKK KL Q SR K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+++Y++ + +E V LA++ L + ++S Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 4.133e-41 Identity = 90/201 (44.78%), Postives = 130/201 (64.68%), Query Frame = 3 Query: 48 EDKMARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQET-VKLAIRALLEV 647 + + YDR IT+FSPDG L+QVEYA EAV++G A++G+R D VVL V+K+ L + V KI D+HI +A AG ADAR L++ AR + Q ++L ++P+ VE +T+ + Q+YTQ GG RPFG++ +I G + G P LY+TDPSGT W+A A G + I+E+LE++Y E+ E + LA+ AL V Sbjct: 4 QSQQQAYDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIE--DGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASV 202 The following BLAST results are available for this feature:
BLAST of CX290233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290233 ID=CX290233; Name=CX290233; organism=Citrus clementina; type=EST; length=667bpback to top |