CX290233

Overview
NameCX290233
Unique NameCX290233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10616 contig Ccv1_Contig10616:120..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.862e-42
Identity = 92/197 (46.70%), Postives = 127/197 (64.47%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETS-GQETVKLAIRALLEVVE 653
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D VVL V+++   KL D   + KI  +D+HI  A +GL ADARVL++RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E     E ++LA+ AL +  E
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTE 204          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.088e-41
Identity = 91/197 (46.19%), Postives = 127/197 (64.47%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVE 653
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D VVL V+K+   +L ++  + KI  +D+HI  A +GL ADAR LV+RAR+E Q +R++ ++ + VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +Y+E       + L + AL +  E
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAE 203          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.420e-41
Identity = 91/199 (45.73%), Postives = 130/199 (65.33%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE-TVKLAIRALLEVVESG 659
            YDR IT+FSPDG L+QVEYA EAV++G A+VGVR  D VV+  ++ +   L +   + KI  +D+H+ +A AG  ADAR L++ AR + Q +RL  ++P +VE +T+ I    Q+YTQ+GG RPFG++ L+ G +   G P L++TDPSGT   W+A A G +   I+ FLE+ Y E    E  ++LA+RAL  V E G
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIE--DGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDG 205          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.855e-41
Identity = 91/192 (47.40%), Postives = 127/192 (66.15%), Query Frame = 3
Query:   66 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY-KETSGQETVKLAIRAL 638
            YDR IT+FSPDG L+QVEYA EAV++G A+VG+R  D +VL  +K+S   L +   V KI   D+H+ +A AG  ADAR L++ AR + Q +RL   +PV +E +T+ +    Q+YTQ GG RPFG++ LI G +   G P LY+TDPSGT   WKA + G + + ++E LE+NY +E S  E V LA+R +
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIE--DGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTI 199          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.855e-41
Identity = 94/201 (46.77%), Postives = 129/201 (64.18%), Query Frame = 3
Query:   48 EDKMARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 647
            +++   YDR IT+FSPDG L+QVEYA EAV++G A++GVR +D VVL V+K+    L +   V KI   D+HI +A AG  ADAR L++ AR + Q ++L   +PV VE +T+ I    Q+YTQ GG RPFG++ +I G     G P L++TDPSGT   WKA A G +   IR++LE++Y E     E V LA+ AL  V
Sbjct:    4 QNQQQAYDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGGI--VNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASV 202          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41
Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   63 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVES 656
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D VVL  EKK   KL Q SR   K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E V LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41
Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   63 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVES 656
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D VVL  EKK   KL Q SR   K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E V LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41
Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   63 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVES 656
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D VVL  EKK   KL Q SR   K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E V LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41
Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   63 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLEVVES 656
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D VVL  EKK   KL Q SR   K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E V LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.133e-41
Identity = 90/201 (44.78%), Postives = 130/201 (64.68%), Query Frame = 3
Query:   48 EDKMARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQET-VKLAIRALLEV 647
            + +   YDR IT+FSPDG L+QVEYA EAV++G A++G+R  D VVL V+K+    L +   V KI   D+HI +A AG  ADAR L++ AR + Q ++L  ++P+ VE +T+ +    Q+YTQ GG RPFG++ +I G +   G P LY+TDPSGT   W+A A G +   I+E+LE++Y E+   E  + LA+ AL  V
Sbjct:    4 QSQQQAYDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIE--DGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASV 202          
The following BLAST results are available for this feature:
BLAST of CX290233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA_METM62.862e-4246.70Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METMA1.088e-4146.19Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA2_HALMA1.420e-4145.73Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSMA_HALWD1.855e-4147.40Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA1_HALMA1.855e-4146.77Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA4B_ORYSJ3.164e-4143.00Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI3.164e-4143.00Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ3.164e-4143.00Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI3.164e-4143.00Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSMA_NATPD4.133e-4144.78Proteasome subunit alpha OS=Natronomonas pharaonis... [more]

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Properties
Property NameValue
Genbank descriptionC02021H11SK IF1 Citrus clementina cDNA clone C02021H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290233 ID=CX290233; Name=CX290233; organism=Citrus clementina; type=EST; length=667bp
AGGAAAAAATCCATTCAAATAAAAAACAAACTCGAGACCGAAAAAAGGAA
GACAAAATGGCTCGATACGATCGCGCGATCACGGTATTTTCTCCGGACGG
CCATCTATTCCAAGTCGAATACGCGCTTGAAGCCGTCCGTAAAGGAAACG
CCGCCGTTGGGGTCCGCGGCACCGACATTGTCGTCCTCGGCGTCGAGAAA
AAATCCGCCGTCAAGCTCCAAGACTCCAGAATGGTGAGGAAGATTGTGTC
ATTGGATAATCACATTGCACTTGCCTGTGCGGGTCTGAAAGCGGATGCAC
GTGTCTTGGTTAACAGAGCGCGTATTGAATGTCAGAGTCATAGGCTTACC
GTAGAGGATCCTGTCACAGTTGAATATATAACGCGGTACATTGCTGGGCT
TCAGCAGAAGTATACACAGAGTGGTGGGGTGAGGCCTTTTGGTCTTTCGA
CCCTGATTGTTGGTTTTGACCCCTATACAGGTGTGCCATCTCTTTATCAG
ACTGATCCATCGGGAACTTTTTCAGCATGGAAAGCCAATGCCACGGGGAG
GAACTCAAATTCAATAAGGGAGTTCTTGGAGAAAAATTATAAAGAAACCT
CTGGGCAAGAAACTGTGAAGTTGGCCATTCGTGCTTTGCTTGAAGTTGTT
GAGAGTGGAGGCAAGAA
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