CX290242

Overview
NameCX290242
Unique NameCX290242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            FPERP QPEC ++++TGDCK+ + C++HHP+ R   +P C LS  GLPLRP
Sbjct:  275 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRP 325          

HSP 2 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    4 FGTRVINNNPLVDNVQIIHQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPVSSD 249
            FG     N+P   N ++      + GEFPER GQPEC Y+L+TG CK+ + C++HHPK++   +    L+  G PLRP  S+
Sbjct:   47 FGATCRFNHP--PNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESE 126          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H65_ORYSJ (Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa subsp. japonica GN=Os12g0278800 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   25 NNPLVDNVQIIHQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            N+P+    +I    Q+   E+PERPGQPEC +F+++G CK++  CKYHHP++ +P  P   LS  GLP++P
Sbjct:  410 NHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVP--PAGALSPLGLPIKP 478          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H5_ORYSJ (Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPVS 243
            FP RPGQPEC Y+L+TG CK+ S CKYHHP+        C LS  GLPLRP S
Sbjct:  296 FPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGS 348          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H6_ORYSJ (Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            FPERPGQP+C Y++RTGDCK+ + CKYHHP+          ++   LPLRP
Sbjct:  304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRP 354          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H58_ARATH (Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPC-TLSDKGLPLRP 237
            FP+RP QPEC YF+RTGDCK+ ++C++HHP      SP   TLS  GLPLRP
Sbjct:  297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPME--AASPEASTLSHIGLPLRP 346          
The following BLAST results are available for this feature:
BLAST of CX290242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ZFNL_PEA2.542e-1356.86Zinc finger CCCH domain-containing protein ZFN-lik... [more]
C3H65_ORYSJ3.320e-1345.07Zinc finger CCCH domain-containing protein 65 OS=O... [more]
C3H5_ORYSJ9.660e-1360.38Zinc finger CCCH domain-containing protein 5 OS=Or... [more]
C3H6_ORYSJ3.108e-1152.94Zinc finger CCCH domain-containing protein 6 OS=Or... [more]
C3H58_ARATH4.059e-1159.62Zinc finger CCCH domain-containing protein 58 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC02022A12SK IF1 Citrus clementina cDNA clone C02022A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290242 ID=CX290242; Name=CX290242; organism=Citrus clementina; type=EST; length=730bp
GAATTCGGCACGAGGGTCATAAACAACAACCCATTGGTAGATAATGTCCA
GATAATTCATCAGCCGCAGATGCTAGTTGGTGAGTTCCCAGAACGACCTG
GCCAGCCTGAGTGCAGTTACTTCCTAAGAACGGGAGACTGTAAGTATAAG
TCTAATTGCAAATATCATCATCCAAAAAATCGAATCCCTAAGTCACCACC
ATGCACTCTCAGCGACAAGGGTCTGCCACTGCGGCCTGTAAGTTCTGATT
TTCAGCTGTGCTTTTGGATGATATACTTACTTGAAAATGACAATTTGAAT
TGCCACCGAATTCTCAGTTACAGAGTGAAAACAAAAACTGCAGTCTACTG
TAAAACAAATCTATGCTCTTACAAAGGTGATGGATATTGACAATGTGTTC
CTCAGTGGTTGTTTATCTGTTTTGTTGCTTCTAAAATCTTCTTCGCTGAT
GGTGTTAATGAGAGACTACTGTTTCTTTTTATCAGTTTTTGACTTTTAGT
CATAAGAATCTGAACTTTGTTTGACCACATCAAGCCACTGAGTTTTCTAT
TTTGTGACCTCTAGTTCTTGGTTTTTGAAATACAGGGTCAAAACGTCTGT
TCATATTATAGCCGCTATGGCATTTGCAAGTTTGGGCCGGCTTGTAAATA
TGATCATCCGATACATCCAGATGCTTCAGCTGAGTATGGGCTAGATCCGC
CTCCATCATTTGGCGACTCTACACTAGGGC
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