CX290242
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13 Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 Query: 85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237 FPERP QPEC ++++TGDCK+ + C++HHP+ R +P C LS GLPLRP Sbjct: 275 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRP 325 HSP 2 Score: 71.633 bits (174), Expect = 4.794e-12 Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1 Query: 4 FGTRVINNNPLVDNVQIIHQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPVSSD 249 FG N+P N ++ + GEFPER GQPEC Y+L+TG CK+ + C++HHPK++ + L+ G PLRP S+ Sbjct: 47 FGATCRFNHP--PNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESE 126
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H65_ORYSJ (Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa subsp. japonica GN=Os12g0278800 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13 Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1 Query: 25 NNPLVDNVQIIHQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237 N+P+ +I Q+ E+PERPGQPEC +F+++G CK++ CKYHHP++ +P P LS GLP++P Sbjct: 410 NHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVP--PAGALSPLGLPIKP 478
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H5_ORYSJ (Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13 Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPVS 243 FP RPGQPEC Y+L+TG CK+ S CKYHHP+ C LS GLPLRP S Sbjct: 296 FPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGS 348
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H6_ORYSJ (Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11 Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 Query: 85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237 FPERPGQP+C Y++RTGDCK+ + CKYHHP+ ++ LPLRP Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRP 354
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H58_ARATH (Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11 Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 Query: 85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPC-TLSDKGLPLRP 237 FP+RP QPEC YF+RTGDCK+ ++C++HHP SP TLS GLPLRP Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPME--AASPEASTLSHIGLPLRP 346 The following BLAST results are available for this feature:
BLAST of CX290242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290242 ID=CX290242; Name=CX290242; organism=Citrus clementina; type=EST; length=730bpback to top |