CX290243

Overview
NameCX290243
Unique NameCX290243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig275 contig Ccv1_Contig275:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 80/243 (32.92%), Postives = 139/243 (57.20%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKH-ENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSV-------------SAEIDYQRENH-----------------HDYAYHVQPIQPNLQE 642
            GRGKIEIKRIEN++NRQVT+SKRR G+LKKA E+ VLCDA+V ++I++S+GKM +YCSP+ SL +++EQY   +     +  H + +  E+ R+K E ++++  +R   G+D+SSL   ++  LE  LE  +  +R ++    +++++ +R+  +++E+++ +L  ++ + + A    E+ +                 SA   Y  E+                   D  + +QP QPNLQ+
Sbjct:    2 GRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQAALTGEVKLGEMAPLAMLQPPPAFAHSATAYYGGESSSSGTALQLMSAAPQLHADDLGFRLQPTQPNLQD 244          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.784e-33
Identity = 66/184 (35.87%), Postives = 124/184 (67.39%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWD--PKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAME 552
            GRGKIEIK+IEN + RQVT+SKRR G++KK +E+++LCDA + LI+++++GK+ ++CS    +  ++++Y   +G RL D     E L +E+E ++RE   ++++LR  +G D++S+ P EL  LE  LE+ ++ +R++++E    ++E + +  +M+EE++N +   L +   A + Q+  ++
Sbjct:    2 GRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQQAGID 185          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.578e-32
Identity = 81/209 (38.76%), Postives = 131/209 (62.68%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHEN---LSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYAYHVQPI 624
            GRGKIE+KRIEN ++RQVT+SKRR G+LKK  E++VLCDA++ LII++S GK+ +YCS   S+  I+ +Y + +G  L  P  +N   L +E+ +++R+   +Q+ L+   G+D+S    +EL  LE  LE+ L  IR ++ E    +ME ++K  KM+E+E++ +   L   ++ +Q+         SA +D+  E+HH +  H Q I
Sbjct:    5 GRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASL--PVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLMNNQMYKQE---------SAAMDH--EDHHHHHEHQQAI 200          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.279e-31
Identity = 80/241 (33.20%), Postives = 138/241 (57.26%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSG-------RRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQ-------QQELAME-------NSVSAEIDYQRENHH--------DYAYHVQPIQPNLQE 642
            GRGKIE+KRIEN ++RQVT+SKRR+G++KK  E++VLCDA++ LI++++ GK+ +YC+P  S+  I+++Y +  G       R      ++ +  E+ R+K E   +Q+ L+   G+D+S++  +EL  LE  L+  L  +R ++     E+ME +++   M+E+E+  +   L   +I RQ       QQ++  E         +  E  +  E+ H         ++Y +QP QPNLQ+
Sbjct:    2 GRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEMYHWLMSNQIQRQAEVEHHHQQQVMTELKLVEQQQPLMNEFPFFGEDLHLGTLPLLDTHSYRLQPTQPNLQD 242          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 67/172 (38.95%), Postives = 115/172 (66.86%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHN--YLKFVLRQQE 519
            RGKI+IKRIEN +NRQVTYSKRRNG+ KKA E++VLCDAKVS+I+ +S+ K+H+Y SP+T+   + +QY +  G  LW   +E +   ++++   N  ++ ++R   GE ++ L  ++++ L + ++N L  IR+++    S +++T +K  + +EE H    L+F  R+++
Sbjct:    3 RGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARRED 174          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.862e-31
Identity = 75/239 (31.38%), Postives = 137/239 (57.32%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKH-ENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQ---------EIARQQQELAMENSVSAEIDYQRENHHDYA-----------------YHVQPIQPNLQE 642
            GRGKIEIKRIENA+NRQVT+SKRR G+LKKA E+ VLCDA+V ++I++S+GKM +YCSP+ SL +++E Y   +     +  H + +  E+ R++ E +++   +R   G+D+S+L   ++  LE  LE  +  +R ++    +++++ +R+   ++E+++++L  ++ +          ++    +   + + ++A   Y  E     A                 + +QP QPNLQ+
Sbjct:    2 GRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINENHHQAAVGGGDVKAMVEMAPVLSMLTAAPAYYGEESSSTALQLTPPLHAVDAAAAAGFRLQPTQPNLQD 240          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.083e-30
Identity = 78/182 (42.86%), Postives = 114/182 (62.64%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRR-----LWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQ 534
            GRGK+++KRIEN  NRQVT+SKRR+G+LKKA EI+VLCDA+V+LII+++ GK+++Y + S  +  ILE+Y R S               N  +E  ++K + + +Q   +HL GED+ SLN KEL  LE  LEN L  IR ++S+ M     E  RK   + EE     K ++ +Q++ +QQ
Sbjct:    2 GRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDS-CMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQ 182          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.847e-30
Identity = 78/182 (42.86%), Postives = 113/182 (62.09%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRR-----LWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQ 534
            GRGK+++KRIEN  NRQVT+SKRR+G+LKKA EI+VLCDA+V+LII+++ GK++ Y + S  +  ILE+Y R S               N  +E  ++K + + +Q   +HL GED+ SLN KEL  LE  LEN L  IR ++S+ M     E  RK   + EE     K ++ +Q++ +QQ
Sbjct:    2 GRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDS-CMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQ 182          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.847e-30
Identity = 68/163 (41.72%), Postives = 104/163 (63.80%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKME----TMRKNGKMMEEEHNYL 495
            GRGK+EI++IEN +NRQVT+SKRRNGI+KKA+E+TVLCDAKVSL++ +S+ K+H Y SP  SL  + ++Y +  G  LW  + E +  +  ++   N  ++ ++    G D+  L   EL AL+  +E  ++ IR+K+   ++    T RK  K +EE H  L
Sbjct:    2 GRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDL 164          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.151e-30
Identity = 72/216 (33.33%), Postives = 123/216 (56.94%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAM---------------ENSVSAEIDYQRENHHDYAYH 612
            RGKI+IKRIEN +NRQVTYSKRRNG+ KKA E+TVLCDA+VS+I+++SS K+H+Y SP+T+  +I++ Y   S   +W  ++E +     ++   N  ++ +++   GE +  L+ +EL  LED +EN    +R+++      ++ET +K  K    + +  K ++ + E+  +     +               E S +  + + + +HH Y  H
Sbjct:    3 RGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNK---SQQDIQKNLIHELELRAEDPHYGLVDNGGDYDSVLGYQIEGSRAYALRFHQNHHHYYPNH 215          
The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
M17_MAIZE1.785e-3332.92MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
TT16_ARATH6.784e-3335.87Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
FBP24_PETHY2.578e-3238.76MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
DEF21_ANTMA1.279e-3133.20MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
DEFA_ANTMA1.671e-3138.95Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MAD29_ORYSJ4.862e-3131.38MADS-box transcription factor 29 OS=Oryza sativa s... [more]
MAD14_ORYSJ1.083e-3042.86MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI1.847e-3042.86MADS-box transcription factor 14 OS=Oryza sativa s... [more]
CMB2_DIACA1.847e-3041.72MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AP3_ARATH3.151e-3033.33Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC02022B01SK IF1 Citrus clementina cDNA clone C02022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bp
CGAATTCGGCACGAGGGGGGAAGAGGCAAGATTGAGATCAAGAGAATAGA
GAACGCAAGCAACAGGCAGGTGACTTATTCAAAGAGAAGAAATGGAATCC
TCAAGAAGGCAAAGGAGATCACTGTGCTGTGTGATGCTAAAGTTTCTCTC
ATCATTTACGCTAGCTCTGGCAAGATGCACGATTACTGTAGCCCTTCTAC
TTCGTTGGTTGATATTTTGGAGCAATATCACCGGCAGTCAGGGAGGAGAT
TGTGGGATCCCAAGCATGAGAACCTCAGCAATGAAATTGAAAGAATCAAG
AGAGAGAATGATAGAATGCAGATCAAGCTCAGGCACCTAAATGGGGAGGA
TATCTCATCTCTGAACCCTAAAGAACTCATAGCCTTAGAGGATGCCCTCG
AAAATGGTCTTGTCAGCATCCGCGACAAACAGAGTGAAAAGATGGAAACG
ATGAGGAAAAATGGAAAAATGATGGAGGAGGAGCATAATTACCTCAAATT
TGTTCTGAGGCAACAGGAGATTGCGAGACAGCAACAGGAGCTTGCTATGG
AGAATAGTGTGAGTGCTGAGATTGATTATCAAAGAGAGAATCATCATGAC
TATGCCTACCATGTGCAGCCTATTCAGCCTAATCTTCAAGAAAGGATCTA
ATAGCACTTTCGGATTCCTTTCTTGAAAGCACTTTAAACATTTTAGGTTC
TGTGATGGAATTAGTGACCTCGATATATATTAATGAAATTACCTCGTTAT
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