CX290243

Overview
NameCX290243
Unique NameCX290243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig275 contig Ccv1_Contig275:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNE--IERI-KREN 309
            GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ S+ K+  Y   ST +  +L +Y        ++  HE+ +N   +E + K+EN
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYA--STDMDKVLLKYTE------YNEPHESRTNSDIVEALNKKEN 93
[Close]
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/98 (37.76%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNE--IERIKRE 306
            GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ S+ K+  Y   ST +  +L +Y        ++  HE+ +N   +E ++++
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYA--STDMDKVLLKYTE------YNEPHESRTNSDIVETLRKK 91
[Close]
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/98 (37.76%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNE--IERIKRE 306
            GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ S+ K+  Y   ST +  +L +Y        ++  HE+ +N   +E ++++
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYA--STDMDKVLLKYTE------YNEPHESRTNSDIVETLRKK 91
[Close]
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/98 (37.76%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNE--IERIKRE 306
            GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ S+ K+  Y   ST +  +L +Y        ++  HE+ +N   +E ++++
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYA--STDMDKVLLKYTE------YNEPHESRTNSDIVETLRKK 91
[Close]
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/98 (37.76%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNE--IERIKRE 306
            GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ S+ K+  Y   ST +  +L +Y        ++  HE+ +N   +E ++++
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYA--STDMDKVLLKYTE------YNEPHESRTNSDIVETLRKK 91
[Close]
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNE--IERIKR 303
            GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ S+ ++  Y   ST +  +L +Y   S        HE+ +N   +E +KR
Sbjct:    2 GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYA--STDMDRVLLKYTEYS------EPHESRTNTDILETLKR 90
The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MEF2C_PIG5.588e-1140.00Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_PONAB7.299e-1137.76Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_MOUSE7.299e-1137.76Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN7.299e-1137.76Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN7.299e-1137.76Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2B_HUMAN9.533e-1140.21Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC02022B01SK IF1 Citrus clementina cDNA clone C02022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bp
CGAATTCGGCACGAGGGGGGAAGAGGCAAGATTGAGATCAAGAGAATAGA
GAACGCAAGCAACAGGCAGGTGACTTATTCAAAGAGAAGAAATGGAATCC
TCAAGAAGGCAAAGGAGATCACTGTGCTGTGTGATGCTAAAGTTTCTCTC
ATCATTTACGCTAGCTCTGGCAAGATGCACGATTACTGTAGCCCTTCTAC
TTCGTTGGTTGATATTTTGGAGCAATATCACCGGCAGTCAGGGAGGAGAT
TGTGGGATCCCAAGCATGAGAACCTCAGCAATGAAATTGAAAGAATCAAG
AGAGAGAATGATAGAATGCAGATCAAGCTCAGGCACCTAAATGGGGAGGA
TATCTCATCTCTGAACCCTAAAGAACTCATAGCCTTAGAGGATGCCCTCG
AAAATGGTCTTGTCAGCATCCGCGACAAACAGAGTGAAAAGATGGAAACG
ATGAGGAAAAATGGAAAAATGATGGAGGAGGAGCATAATTACCTCAAATT
TGTTCTGAGGCAACAGGAGATTGCGAGACAGCAACAGGAGCTTGCTATGG
AGAATAGTGTGAGTGCTGAGATTGATTATCAAAGAGAGAATCATCATGAC
TATGCCTACCATGTGCAGCCTATTCAGCCTAATCTTCAAGAAAGGATCTA
ATAGCACTTTCGGATTCCTTTCTTGAAAGCACTTTAAACATTTTAGGTTC
TGTGATGGAATTAGTGACCTCGATATATATTAATGAAATTACCTCGTTAT
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