CX290243

Overview
NameCX290243
Unique NameCX290243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig275 contig Ccv1_Contig275:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.912e-27
Identity = 65/167 (38.92%), Postives = 109/167 (65.27%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH---RQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNP-KELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYL 495
            G+GKIE+KRIE+A+ RQVT+SKRR G LKKA E+ VLCDA+V +++++  GK+ D+CSP   L+++  +Y    R +  +  +   E +  EI R++ E D+++  LR   GED+SS++   EL  L+  LE+ L  +  ++    S+++E MR+  + + E++N+L
Sbjct:    2 GQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFL 168          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.497e-27
Identity = 70/193 (36.27%), Postives = 114/193 (59.07%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDP------KHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSA 567
            GRGKIEIKRIEN ++RQVT+ KRRNG+LKKA E+ +LCDA+++LI+++S G+++++ S   S    +E+Y + S              H+    E  +++ +   +Q   RHL GE I ++  KEL +LE+ LE G+  IR K+ E    ++E M+K    ++ E+ +L+  + + E A    + A E+   A
Sbjct:    2 GRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEF-SNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQAAEDDEMA 193          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.497e-27
Identity = 75/212 (35.38%), Postives = 125/212 (58.96%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS--GRRLWDP-----KHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQE--IARQQQELAMENSVSAEIDYQRENHHDYAYHV 615
            GRG++E+KRIEN  NRQVT+SKRR G+LKKA+EI+VLCDA+VSLI+++  GK+ +Y S S  +  +LE+Y R S   R+L  P        N S E  R+K + + ++   RH  GE++  ++ K+L  LE  LE  L  IR ++    +E +  +++  K ++EE++ L   ++++E  +  +Q +    N    ++   +   H + Y +
Sbjct:    2 GRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSES-CMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQLNRSVDDVPQPQPFQHPHLYMI 212          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.497e-27
Identity = 77/222 (34.68%), Postives = 127/222 (57.21%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENL------------SNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHH-DYAYHVQPIQPN 633
            GRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+V+LII+++ GK++++CS S+S++  LE+Y + +    + P   N+              E  ++K   D +Q   R+L GED+  L+ KEL  LE  L++ L  IR  ++    +++  ++   +M+ E +  L+              LA    +  +++  +E+HH DY  H Q  Q N
Sbjct:    2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMIRTLERYQKCN----YGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRL------------RLADGYQMPLQLNPNQEDHHVDYGRHDQQQQQN 206          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.261e-27
Identity = 72/176 (40.91%), Postives = 112/176 (63.64%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS--GRRLWDPK---HENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQE 519
            GRG ++++RIEN  NRQVT+SKRRNG+LKKA EI+VLCDA V+LI++++ GK++++ S S S+  ILE+Y R S   R + +P     EN  +E   +K + D +Q   R L GE + +L  KEL  LE  LE  L  IR K++    E +  ++K  K ++ ++N L+ ++  ++
Sbjct:    2 GRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHS-SMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEK 176          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.261e-27
Identity = 72/176 (40.91%), Postives = 112/176 (63.64%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS--GRRLWDPK---HENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQE 519
            GRG ++++RIEN  NRQVT+SKRRNG+LKKA EI+VLCDA V+LI++++ GK++++ S S S+  ILE+Y R S   R + +P     EN  +E   +K + D +Q   R L GE + +L  KEL  LE  LE  L  IR K++    E +  ++K  K ++ ++N L+ ++  ++
Sbjct:    2 GRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHS-SMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEK 176          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.563e-27
Identity = 73/206 (35.44%), Postives = 128/206 (62.14%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRR--LWDPKHE--NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHN--YLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYA 606
            GRGKI I+RI+N+++RQVT+SKRRNGI KKAKE+ +LCDA+V L+I++S+G++++Y   STS+  ++++Y +    +  + +P  E      E   ++++   +Q   R L GED+S LN KEL +LE+ LE  L S+R K+     +++  + + G ++ +E+   Y K  L +QE A   +++  E    +E++      +++A
Sbjct:    2 GRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY--SSTSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIRQENAELYKKI-YETEGPSEVNRDSPTPYNFA 204          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.265e-27
Identity = 78/226 (34.51%), Postives = 129/226 (57.08%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR------QSGRRLWDPKHENLSNEIE--RIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEID---------YQRENHHDYAYHVQPI--QPNLQ 639
            GRG++E+KR+EN  NRQVT++KRRNG+LKKA E++VLCDA+V+LI++++ GK++++CS S S++  LE+Y +      +      +     LS++ E  ++K   + +Q   R+L GED+  L+ K+L  LE  L++ L  IR  +++ M  + + G +  +EH     +       RQ+ E    NS+   +          +Q   H D  + VQPI  +P LQ
Sbjct:    2 GRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTS-SMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFM--LDQLGDLQRKEH----LLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQ 220          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.265e-27
Identity = 71/204 (34.80%), Postives = 125/204 (61.27%), Query Frame = 1
Query:   16 GGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHD 600
            G RGKIEIKRIEN +NRQVT+ KRR+G+LKKA E++VLCDA+V+L++++S G++++Y   + S+ + +E+Y +      +   + +   ++   E  ++K++   +Q   R L G++I+++N +EL  LE  L+ GL  IR +++E    ++E M++    ++ ++ YLK  + + E  R  Q + M  S S     Q   H+D
Sbjct:   43 GSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEY--SNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESE--RGLQTVNMMGSASTSEYVQNMIHYD 242          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.265e-27
Identity = 72/183 (39.34%), Postives = 118/183 (64.48%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR--QSGRRLWD---PKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQE 540
            GRG++++KRIEN  NRQVT+SKRR+G+LKKA EI+VLCDA+V+LI+++S GK+ +Y S  + +  ILE+Y R   S ++L      + EN   E  ++K   + ++   R+  GED+ SL+ KEL +LE  L+  + SIR +++    E +  ++K  K +++ +N L   ++++E    QQE
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEY-STDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREKKTGQQE 183          
The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MAD30_ORYSJ1.912e-2738.92MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD21_ORYSJ2.497e-2736.27MADS-box transcription factor 21 OS=Oryza sativa s... [more]
CAL_ARATH2.497e-2735.38Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AGL9_SINAL2.497e-2734.68Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MAD18_ORYSJ3.261e-2740.91MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI3.261e-2740.91MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD27_ORYSJ5.563e-2735.44MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MTF1_PEA7.265e-2734.51MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MAD58_ORYSJ7.265e-2734.80MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AGL8_ARATH7.265e-2739.34Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC02022B01SK IF1 Citrus clementina cDNA clone C02022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bp
CGAATTCGGCACGAGGGGGGAAGAGGCAAGATTGAGATCAAGAGAATAGA
GAACGCAAGCAACAGGCAGGTGACTTATTCAAAGAGAAGAAATGGAATCC
TCAAGAAGGCAAAGGAGATCACTGTGCTGTGTGATGCTAAAGTTTCTCTC
ATCATTTACGCTAGCTCTGGCAAGATGCACGATTACTGTAGCCCTTCTAC
TTCGTTGGTTGATATTTTGGAGCAATATCACCGGCAGTCAGGGAGGAGAT
TGTGGGATCCCAAGCATGAGAACCTCAGCAATGAAATTGAAAGAATCAAG
AGAGAGAATGATAGAATGCAGATCAAGCTCAGGCACCTAAATGGGGAGGA
TATCTCATCTCTGAACCCTAAAGAACTCATAGCCTTAGAGGATGCCCTCG
AAAATGGTCTTGTCAGCATCCGCGACAAACAGAGTGAAAAGATGGAAACG
ATGAGGAAAAATGGAAAAATGATGGAGGAGGAGCATAATTACCTCAAATT
TGTTCTGAGGCAACAGGAGATTGCGAGACAGCAACAGGAGCTTGCTATGG
AGAATAGTGTGAGTGCTGAGATTGATTATCAAAGAGAGAATCATCATGAC
TATGCCTACCATGTGCAGCCTATTCAGCCTAATCTTCAAGAAAGGATCTA
ATAGCACTTTCGGATTCCTTTCTTGAAAGCACTTTAAACATTTTAGGTTC
TGTGATGGAATTAGTGACCTCGATATATATTAATGAAATTACCTCGTTAT
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