CX290243

Overview
NameCX290243
Unique NameCX290243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig275 contig Ccv1_Contig275:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.488e-27
Identity = 74/216 (34.26%), Postives = 125/216 (57.87%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR------QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQR---ENHHDYAYHVQPIQPNLQ 639
            GRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+V+LII+++ GK++++CS S+S++  LE+Y +      ++     +    +   E  ++K   + +Q   R+L GED+  LN KEL +LE  L+  L  IR  +++ M    ++ +  E   N     L+Q+ +      L  + + + ++ Y R   +   D  +H    +P LQ
Sbjct:    2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLNLQWQQN-AQDVGYGRQATQTQGDGFFHPLECEPTLQ 215          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 70/184 (38.04%), Postives = 117/184 (63.59%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS----GRRLWDPKHENLS---NEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQ 537
            GRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+V+LII+++ GK++++CS + S+   LE+Y + S       + + + E L    NE  ++K   + +Q   R+L GED+ SL  KEL +LE  L++ L  +R  ++    +++  +++  +M+ E +  L+  L +    R QQ
Sbjct:    2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-TQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQ 184          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 70/184 (38.04%), Postives = 117/184 (63.59%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS----GRRLWDPKHENLS---NEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQ 537
            GRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+V+LII+++ GK++++CS + S+   LE+Y + S       + + + E L    NE  ++K   + +Q   R+L GED+ SL  KEL +LE  L++ L  +R  ++    +++  +++  +M+ E +  L+  L +    R QQ
Sbjct:    2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-TQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQ 184          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 77/215 (35.81%), Postives = 127/215 (59.07%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLS----NEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIA-RQQQELAMENSVSAEIDYQRENHHDYAYHVQPIQPNL 636
            GRG++E+KRIEN  NRQVT+SKRRNG+LKKA E++VLCDA+V+LII++S GK++++   S  +   +E+Y+R     L + K E  +     E+ ++K + + +    R+L GED+  +  KEL ALE  LE  L + R +++    E+ME +RK  + + + +  LK     +  A +  Q+L   ++ S   D      ++  + V+P  PN+
Sbjct:    2 GRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF--GSVGIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKTFQDLWANSAASVAGD-----PNNSEFPVEPSHPNV 209          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26
Identity = 71/186 (38.17%), Postives = 119/186 (63.98%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR--QSGRRLWD---PKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAM 549
            GRG++++KRIEN  NRQVT+SKRR+G+LKKA EI+VLCDA+V+L+I++S GK+ +Y S  + +  ILE+Y R   S ++L      + EN   E  ++K   + ++   R+  GED+ SL+ KEL +LE  L   + SIR +++    E +  ++K  K++++ +N L   ++++E     QE+ +
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEY-STDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQL 186          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.114e-26
Identity = 67/184 (36.41%), Postives = 113/184 (61.41%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQEL 543
            GRGKIEIKRIEN +NRQVT+ KRRNG+LKKA E++VLCDA+V+LI++++ G++++Y   + S+   +E+Y +      +   + +   +    E  ++++E   +Q   R++ GE + SL  ++L  LE  LE G+  IR K++E    ++E M+K    +   + YL+  + + E A+Q   L
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA--NNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNL 199          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.761e-26
Identity = 68/170 (40.00%), Postives = 109/170 (64.12%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH------RQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLK 498
            GRG++E+KRIEN  NRQVT+SKRRNG+LKKA E++VLCDA+V+LII++S GK++++   S  +   LE+Y+      + S   L   +H++   E+ R+K + + +Q   RH+ GED+  L+ KEL  LE  LE  L   R +++    E+++ +R+  + + E +  LK
Sbjct:    2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF--GSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLK 169          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.606e-26
Identity = 54/144 (37.50%), Postives = 99/144 (68.75%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWD-PKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKME 447
            GRG++E+K+IEN +NRQVT+SKRR G+LKKA E+ +LCDA++ +I+++ +GKM++Y SP   + +I ++Y +    R  +    + +  E+ R+K EN+R++I +R   G+D++SL  +++  LE  +E  L  +R ++ + ++
Sbjct:    2 GRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLD 145          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 68/177 (38.42%), Postives = 112/177 (63.28%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQY--HRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQEL 543
            GRGKIEIKRIENA++RQVT+SKRR+G+LKKA+E++VLCDA+V++I+++ SGK+ +Y   ST +   L +Y  H+ S       K E    E++ +K +  ++Q K   L G+ ++ L  KEL +LE  L + L+++R+++   +    +  ++ E+     +  L  + + RQ QEL
Sbjct:    2 GRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY--SSTGMKQTLSRYGNHQSSSA----SKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQ-----RAELENETLRRQVQEL 167          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.150e-26
Identity = 72/173 (41.62%), Postives = 110/173 (63.58%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRL--WDPKHENLSN--EIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM----ETMRKNGKMMEEEHNYLKFVLRQ 513
            GRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+V+LI++++ GK++++CS S  +   LE+Y R S   L    P  E  S+  E  ++K + D +Q   R+L GED+  L+ KEL  LE  L+  L  IR  +++ M      ++K  +M+ E +  LK  L +
Sbjct:    2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTS-CMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE 173          
The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AGL9_PETHY9.488e-2734.26Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MADS7_ORYSJ1.239e-2638.04MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI1.239e-2638.04MADS-box transcription factor 7 OS=Oryza sativa su... [more]
AGL6_ARATH1.239e-2635.81Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AGL8_SINAL1.618e-2638.17Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AG_PANGI2.114e-2636.41Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
MAD17_ORYSJ2.761e-2640.00MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MAD31_ORYSJ3.606e-2637.50MADS-box transcription factor 31 OS=Oryza sativa s... [more]
AGL15_ARATH4.709e-2638.42Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
CMB1_DIACA6.150e-2641.62MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02022B01SK IF1 Citrus clementina cDNA clone C02022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bp
CGAATTCGGCACGAGGGGGGAAGAGGCAAGATTGAGATCAAGAGAATAGA
GAACGCAAGCAACAGGCAGGTGACTTATTCAAAGAGAAGAAATGGAATCC
TCAAGAAGGCAAAGGAGATCACTGTGCTGTGTGATGCTAAAGTTTCTCTC
ATCATTTACGCTAGCTCTGGCAAGATGCACGATTACTGTAGCCCTTCTAC
TTCGTTGGTTGATATTTTGGAGCAATATCACCGGCAGTCAGGGAGGAGAT
TGTGGGATCCCAAGCATGAGAACCTCAGCAATGAAATTGAAAGAATCAAG
AGAGAGAATGATAGAATGCAGATCAAGCTCAGGCACCTAAATGGGGAGGA
TATCTCATCTCTGAACCCTAAAGAACTCATAGCCTTAGAGGATGCCCTCG
AAAATGGTCTTGTCAGCATCCGCGACAAACAGAGTGAAAAGATGGAAACG
ATGAGGAAAAATGGAAAAATGATGGAGGAGGAGCATAATTACCTCAAATT
TGTTCTGAGGCAACAGGAGATTGCGAGACAGCAACAGGAGCTTGCTATGG
AGAATAGTGTGAGTGCTGAGATTGATTATCAAAGAGAGAATCATCATGAC
TATGCCTACCATGTGCAGCCTATTCAGCCTAATCTTCAAGAAAGGATCTA
ATAGCACTTTCGGATTCCTTTCTTGAAAGCACTTTAAACATTTTAGGTTC
TGTGATGGAATTAGTGACCTCGATATATATTAATGAAATTACCTCGTTAT
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